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conda-forge / packages / r-shazam

Provides a computational framework for analyzing mutations in immunoglobulin (Ig) sequences. Includes methods for Bayesian estimation of antigen-driven selection pressure, mutational load quantification, building of somatic hypermutation (SHM) models, and model-dependent distance calculations. Also includes empirically derived models of SHM for both mice and humans. Citations: Gupta and Vander Heiden, et al (2015) <doi:10.1093/bioinformatics/btv359>, Yaari, et al (2012) <doi:10.1093/nar/gks457>, Yaari, et al (2013) <doi:10.3389/fimmu.2013.00358>, Cui, et al (2016) <doi:10.4049/jimmunol.1502263>.

copied from cf-staging / r-shazam

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Type Size Name Uploaded Downloads Labels
conda 2.1 MB | win-64/r-shazam-1.0.2-r43h6addd8b_3.conda  2 months and 22 days ago 195 main
conda 2.1 MB | win-64/r-shazam-1.0.2-r44h6addd8b_3.conda  2 months and 22 days ago 205 main
conda 2.1 MB | osx-64/r-shazam-1.0.2-r44hbe3e9c8_3.conda  2 months and 22 days ago 191 main
conda 2.1 MB | osx-64/r-shazam-1.0.2-r43hbe3e9c8_3.conda  2 months and 22 days ago 210 main
conda 2.1 MB | linux-64/r-shazam-1.0.2-r44hc72bb7e_3.conda  2 months and 22 days ago 467 main
conda 2.1 MB | linux-64/r-shazam-1.0.2-r43hc72bb7e_3.conda  2 months and 22 days ago 548 main
conda 2.0 MB | win-64/r-shazam-1.0.2-r41h6addd8b_2.conda  1 year and 4 months ago 448 main
conda 2.1 MB | osx-64/r-shazam-1.0.2-r42hbe3e9c8_2.conda  1 year and 4 months ago 229 main
conda 2.1 MB | osx-64/r-shazam-1.0.2-r43hbe3e9c8_2.conda  1 year and 4 months ago 222 main
conda 2.1 MB | linux-64/r-shazam-1.0.2-r42hc72bb7e_2.conda  1 year and 4 months ago 1391 main
conda 2.1 MB | linux-64/r-shazam-1.0.2-r43hc72bb7e_2.conda  1 year and 4 months ago 1089 main
conda 2.1 MB | win-64/r-shazam-1.0.2-r41h6addd8b_1.tar.bz2  2 years and 9 days ago 540 main
conda 2.1 MB | osx-64/r-shazam-1.0.2-r42hbe3e9c8_1.tar.bz2  2 years and 9 days ago 76 main
conda 2.1 MB | osx-64/r-shazam-1.0.2-r41hbe3e9c8_1.tar.bz2  2 years and 9 days ago 76 main
conda 2.1 MB | linux-64/r-shazam-1.0.2-r41hc72bb7e_1.tar.bz2  2 years and 9 days ago 1421 main
conda 2.1 MB | linux-64/r-shazam-1.0.2-r42hc72bb7e_1.tar.bz2  2 years and 9 days ago 1463 main
conda 2.1 MB | win-64/r-shazam-1.0.2-r40h6addd8b_0.tar.bz2  3 years and 4 months ago 797 main
conda 2.1 MB | win-64/r-shazam-1.0.2-r41h6addd8b_0.tar.bz2  3 years and 4 months ago 812 main
conda 2.1 MB | osx-64/r-shazam-1.0.2-r40hbe3e9c8_0.tar.bz2  3 years and 4 months ago 143 main
conda 2.1 MB | osx-64/r-shazam-1.0.2-r41hbe3e9c8_0.tar.bz2  3 years and 4 months ago 166 main
conda 2.1 MB | linux-64/r-shazam-1.0.2-r40hc72bb7e_0.tar.bz2  3 years and 4 months ago 2037 main
conda 2.1 MB | linux-64/r-shazam-1.0.2-r41hc72bb7e_0.tar.bz2  3 years and 4 months ago 2070 main
conda 2.2 MB | win-64/r-shazam-1.0.2-r36h6115d3f_0.tar.bz2  4 years and 2 months ago 1011 main
conda 2.2 MB | win-64/r-shazam-1.0.2-r40h6115d3f_0.tar.bz2  4 years and 2 months ago 1003 main
conda 2.1 MB | osx-64/r-shazam-1.0.2-r40h6115d3f_0.tar.bz2  4 years and 2 months ago 327 main
conda 2.1 MB | osx-64/r-shazam-1.0.2-r36h6115d3f_0.tar.bz2  4 years and 2 months ago 330 main
conda 2.1 MB | linux-64/r-shazam-1.0.2-r40h6115d3f_0.tar.bz2  4 years and 2 months ago 2688 main
conda 2.1 MB | linux-64/r-shazam-1.0.2-r36h6115d3f_0.tar.bz2  4 years and 2 months ago 3015 main
conda 2.2 MB | win-64/r-shazam-1.0.1-r40h6115d3f_0.tar.bz2  4 years and 3 months ago 996 main
conda 2.2 MB | win-64/r-shazam-1.0.1-r36h6115d3f_0.tar.bz2  4 years and 3 months ago 993 main
conda 2.1 MB | osx-64/r-shazam-1.0.1-r36h6115d3f_0.tar.bz2  4 years and 3 months ago 325 main
conda 2.1 MB | osx-64/r-shazam-1.0.1-r40h6115d3f_0.tar.bz2  4 years and 3 months ago 319 main
conda 2.1 MB | linux-64/r-shazam-1.0.1-r40h6115d3f_0.tar.bz2  4 years and 3 months ago 2686 main
conda 2.1 MB | linux-64/r-shazam-1.0.1-r36h6115d3f_0.tar.bz2  4 years and 3 months ago 2672 main
conda 2.2 MB | win-64/r-shazam-1.0.0-r40h6115d3f_1.tar.bz2  4 years and 4 months ago 998 main
conda 2.2 MB | win-64/r-shazam-1.0.0-r36h6115d3f_1.tar.bz2  4 years and 4 months ago 1009 main
conda 2.1 MB | osx-64/r-shazam-1.0.0-r36h6115d3f_1.tar.bz2  4 years and 4 months ago 330 main
conda 2.1 MB | osx-64/r-shazam-1.0.0-r40h6115d3f_1.tar.bz2  4 years and 4 months ago 324 main
conda 2.1 MB | linux-64/r-shazam-1.0.0-r36h6115d3f_1.tar.bz2  4 years and 4 months ago 2668 main
conda 2.1 MB | linux-64/r-shazam-1.0.0-r40h6115d3f_1.tar.bz2  4 years and 4 months ago 2680 main
conda 2.2 MB | win-64/r-shazam-1.0.0-r36h6115d3f_0.tar.bz2  4 years and 4 months ago 1015 main
conda 2.1 MB | osx-64/r-shazam-1.0.0-r36h6115d3f_0.tar.bz2  4 years and 4 months ago 326 main
conda 2.1 MB | linux-64/r-shazam-1.0.0-r36h6115d3f_0.tar.bz2  4 years and 4 months ago 2652 main
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