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conda-forge / packages / r-shazam

Provides a computational framework for analyzing mutations in immunoglobulin (Ig) sequences. Includes methods for Bayesian estimation of antigen-driven selection pressure, mutational load quantification, building of somatic hypermutation (SHM) models, and model-dependent distance calculations. Also includes empirically derived models of SHM for both mice and humans. Citations: Gupta and Vander Heiden, et al (2015) <doi:10.1093/bioinformatics/btv359>, Yaari, et al (2012) <doi:10.1093/nar/gks457>, Yaari, et al (2013) <doi:10.3389/fimmu.2013.00358>, Cui, et al (2016) <doi:10.4049/jimmunol.1502263>.

copied from cf-staging / r-shazam

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Type Size Name Uploaded Downloads Labels
conda 2.1 MB | win-64/r-shazam-1.0.2-r43h6addd8b_3.conda  6 months and 26 days ago 478 main
conda 2.1 MB | win-64/r-shazam-1.0.2-r44h6addd8b_3.conda  6 months and 26 days ago 491 main
conda 2.1 MB | osx-64/r-shazam-1.0.2-r44hbe3e9c8_3.conda  6 months and 26 days ago 404 main
conda 2.1 MB | osx-64/r-shazam-1.0.2-r43hbe3e9c8_3.conda  6 months and 26 days ago 426 main
conda 2.1 MB | linux-64/r-shazam-1.0.2-r44hc72bb7e_3.conda  6 months and 26 days ago 1012 main
conda 2.1 MB | linux-64/r-shazam-1.0.2-r43hc72bb7e_3.conda  6 months and 26 days ago 1187 main
conda 2.0 MB | win-64/r-shazam-1.0.2-r41h6addd8b_2.conda  1 year and 8 months ago 727 main
conda 2.1 MB | osx-64/r-shazam-1.0.2-r42hbe3e9c8_2.conda  1 year and 8 months ago 435 main
conda 2.1 MB | osx-64/r-shazam-1.0.2-r43hbe3e9c8_2.conda  1 year and 8 months ago 438 main
conda 2.1 MB | linux-64/r-shazam-1.0.2-r42hc72bb7e_2.conda  1 year and 8 months ago 1908 main
conda 2.1 MB | linux-64/r-shazam-1.0.2-r43hc72bb7e_2.conda  1 year and 8 months ago 1563 main
conda 2.1 MB | win-64/r-shazam-1.0.2-r41h6addd8b_1.tar.bz2  2 years and 4 months ago 547 main
conda 2.1 MB | osx-64/r-shazam-1.0.2-r42hbe3e9c8_1.tar.bz2  2 years and 4 months ago 77 main
conda 2.1 MB | osx-64/r-shazam-1.0.2-r41hbe3e9c8_1.tar.bz2  2 years and 4 months ago 77 main
conda 2.1 MB | linux-64/r-shazam-1.0.2-r41hc72bb7e_1.tar.bz2  2 years and 4 months ago 1790 main
conda 2.1 MB | linux-64/r-shazam-1.0.2-r42hc72bb7e_1.tar.bz2  2 years and 4 months ago 1832 main
conda 2.1 MB | win-64/r-shazam-1.0.2-r40h6addd8b_0.tar.bz2  3 years and 9 months ago 804 main
conda 2.1 MB | win-64/r-shazam-1.0.2-r41h6addd8b_0.tar.bz2  3 years and 9 months ago 819 main
conda 2.1 MB | osx-64/r-shazam-1.0.2-r40hbe3e9c8_0.tar.bz2  3 years and 9 months ago 144 main
conda 2.1 MB | osx-64/r-shazam-1.0.2-r41hbe3e9c8_0.tar.bz2  3 years and 9 months ago 168 main
conda 2.1 MB | linux-64/r-shazam-1.0.2-r40hc72bb7e_0.tar.bz2  3 years and 9 months ago 2405 main
conda 2.1 MB | linux-64/r-shazam-1.0.2-r41hc72bb7e_0.tar.bz2  3 years and 9 months ago 2440 main
conda 2.2 MB | win-64/r-shazam-1.0.2-r36h6115d3f_0.tar.bz2  4 years and 6 months ago 1017 main
conda 2.2 MB | win-64/r-shazam-1.0.2-r40h6115d3f_0.tar.bz2  4 years and 6 months ago 1010 main
conda 2.1 MB | osx-64/r-shazam-1.0.2-r40h6115d3f_0.tar.bz2  4 years and 6 months ago 328 main
conda 2.1 MB | osx-64/r-shazam-1.0.2-r36h6115d3f_0.tar.bz2  4 years and 6 months ago 331 main
conda 2.1 MB | linux-64/r-shazam-1.0.2-r40h6115d3f_0.tar.bz2  4 years and 6 months ago 3056 main
conda 2.1 MB | linux-64/r-shazam-1.0.2-r36h6115d3f_0.tar.bz2  4 years and 6 months ago 3398 main
conda 2.2 MB | win-64/r-shazam-1.0.1-r40h6115d3f_0.tar.bz2  4 years and 7 months ago 1003 main
conda 2.2 MB | win-64/r-shazam-1.0.1-r36h6115d3f_0.tar.bz2  4 years and 7 months ago 1001 main
conda 2.1 MB | osx-64/r-shazam-1.0.1-r36h6115d3f_0.tar.bz2  4 years and 7 months ago 326 main
conda 2.1 MB | osx-64/r-shazam-1.0.1-r40h6115d3f_0.tar.bz2  4 years and 7 months ago 320 main
conda 2.1 MB | linux-64/r-shazam-1.0.1-r40h6115d3f_0.tar.bz2  4 years and 7 months ago 3057 main
conda 2.1 MB | linux-64/r-shazam-1.0.1-r36h6115d3f_0.tar.bz2  4 years and 7 months ago 3041 main
conda 2.2 MB | win-64/r-shazam-1.0.0-r40h6115d3f_1.tar.bz2  4 years and 8 months ago 1006 main
conda 2.2 MB | win-64/r-shazam-1.0.0-r36h6115d3f_1.tar.bz2  4 years and 8 months ago 1016 main
conda 2.1 MB | osx-64/r-shazam-1.0.0-r36h6115d3f_1.tar.bz2  4 years and 8 months ago 332 main
conda 2.1 MB | osx-64/r-shazam-1.0.0-r40h6115d3f_1.tar.bz2  4 years and 8 months ago 325 main
conda 2.1 MB | linux-64/r-shazam-1.0.0-r36h6115d3f_1.tar.bz2  4 years and 8 months ago 3033 main
conda 2.1 MB | linux-64/r-shazam-1.0.0-r40h6115d3f_1.tar.bz2  4 years and 8 months ago 3046 main
conda 2.2 MB | win-64/r-shazam-1.0.0-r36h6115d3f_0.tar.bz2  4 years and 8 months ago 1022 main
conda 2.1 MB | osx-64/r-shazam-1.0.0-r36h6115d3f_0.tar.bz2  4 years and 8 months ago 327 main
conda 2.1 MB | linux-64/r-shazam-1.0.0-r36h6115d3f_0.tar.bz2  4 years and 8 months ago 3024 main
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