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conda-forge / packages / r-sctransform

A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for batch correction, and data correction. See Hafemeister and Satija 2019 <doi:10.1101/576827> for more details.

copied from cf-post-staging / r-sctransform

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Type Size Name Uploaded Downloads Labels
conda 450.3 kB | win-64/r-sctransform-0.3.2-r36he3aa7d2_0.tar.bz2  4 years and 8 months ago 940 main
conda 454.6 kB | linux-64/r-sctransform-0.3.2-r40h34e6507_0.tar.bz2  4 years and 8 months ago 4307 main
conda 455.0 kB | osx-64/r-sctransform-0.3.2-r40hf695eb6_0.tar.bz2  4 years and 8 months ago 373 main
conda 455.6 kB | osx-64/r-sctransform-0.3.2-r36hf695eb6_0.tar.bz2  4 years and 8 months ago 391 main
conda 455.8 kB | linux-64/r-sctransform-0.3.2-r36h34e6507_0.tar.bz2  4 years and 8 months ago 3782 main
conda 417.9 kB | win-64/r-sctransform-0.3.1-r36he3aa7d2_1.tar.bz2  4 years and 10 months ago 971 main
conda 417.3 kB | win-64/r-sctransform-0.3.1-r40he3aa7d2_1.tar.bz2  4 years and 10 months ago 963 main
conda 418.0 kB | osx-64/r-sctransform-0.3.1-r40hc5079d1_1.tar.bz2  4 years and 10 months ago 313 main
conda 418.7 kB | osx-64/r-sctransform-0.3.1-r36hc5079d1_1.tar.bz2  4 years and 10 months ago 341 main
conda 415.4 kB | linux-64/r-sctransform-0.3.1-r40hdb2a40c_1.tar.bz2  4 years and 10 months ago 3299 main
conda 416.0 kB | linux-64/r-sctransform-0.3.1-r36hdb2a40c_1.tar.bz2  4 years and 10 months ago 3451 main
conda 417.4 kB | win-64/r-sctransform-0.3.1-r36h096a1c2_0.tar.bz2  4 years and 10 months ago 989 main
conda 417.4 kB | win-64/r-sctransform-0.3.1-r40h096a1c2_0.tar.bz2  4 years and 10 months ago 1007 main
conda 415.1 kB | linux-64/r-sctransform-0.3.1-r40h1b71b39_0.tar.bz2  4 years and 10 months ago 3135 main
conda 418.2 kB | osx-64/r-sctransform-0.3.1-r40h342fd00_0.tar.bz2  4 years and 10 months ago 311 main
conda 416.2 kB | linux-64/r-sctransform-0.3.1-r36h1b71b39_0.tar.bz2  4 years and 10 months ago 3391 main
conda 418.7 kB | osx-64/r-sctransform-0.3.1-r36h342fd00_0.tar.bz2  4 years and 10 months ago 334 main
conda 381.0 kB | win-64/r-sctransform-0.3-r40h796a38f_0.tar.bz2  4 years and 11 months ago 1006 main
conda 381.6 kB | win-64/r-sctransform-0.3-r36h796a38f_0.tar.bz2  4 years and 11 months ago 1028 main
conda 374.0 kB | linux-64/r-sctransform-0.3-r40h0357c0b_0.tar.bz2  4 years and 11 months ago 3465 main
conda 373.6 kB | linux-64/r-sctransform-0.3-r36h0357c0b_0.tar.bz2  4 years and 11 months ago 3588 main
conda 371.3 kB | osx-64/r-sctransform-0.3-r36h710217c_0.tar.bz2  4 years and 11 months ago 366 main
conda 370.9 kB | osx-64/r-sctransform-0.3-r40h710217c_0.tar.bz2  4 years and 11 months ago 343 main
conda 344.0 kB | win-64/r-sctransform-0.2.1-r36h796a38f_1.tar.bz2  5 years and 4 months ago 1060 main
conda 343.4 kB | win-64/r-sctransform-0.2.1-r40h796a38f_1.tar.bz2  5 years and 4 months ago 1054 main
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