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conda-forge / packages / r-sctransform

A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for batch correction, and data correction. See Hafemeister and Satija 2019 <doi:10.1101/576827> for more details.

copied from cf-staging / r-sctransform

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Type Size Name Uploaded Downloads Labels
conda 569.0 kB | linux-64/r-sctransform-0.3.5-r41h9f5de39_1.tar.bz2  2 years and 4 months ago 10032 main
conda 569.4 kB | linux-64/r-sctransform-0.3.5-r42h9f5de39_1.tar.bz2  2 years and 4 months ago 11944 main
conda 555.4 kB | win-64/r-sctransform-0.3.5-r41h78deb2a_0.tar.bz2  2 years and 4 months ago 545 main
conda 562.4 kB | osx-arm64/r-sctransform-0.3.5-r41h55306a0_0.tar.bz2  2 years and 4 months ago 77 main
conda 576.5 kB | osx-64/r-sctransform-0.3.5-r41h4f1a15b_0.tar.bz2  2 years and 4 months ago 93 main
conda 569.2 kB | linux-64/r-sctransform-0.3.5-r41h9f5de39_0.tar.bz2  2 years and 4 months ago 1939 main
conda 555.0 kB | win-64/r-sctransform-0.3.4-r41h78deb2a_0.tar.bz2  2 years and 4 months ago 558 main
conda 562.5 kB | osx-arm64/r-sctransform-0.3.4-r41h55306a0_0.tar.bz2  2 years and 4 months ago 73 main
conda 576.3 kB | osx-64/r-sctransform-0.3.4-r41h4f1a15b_0.tar.bz2  2 years and 4 months ago 80 main
conda 569.1 kB | linux-64/r-sctransform-0.3.4-r41h9f5de39_0.tar.bz2  2 years and 4 months ago 1827 main
conda 555.5 kB | win-64/r-sctransform-0.3.4-r41h482c5d8_0.tar.bz2  2 years and 6 months ago 635 main
conda 567.9 kB | win-64/r-sctransform-0.3.4-r40h482c5d8_0.tar.bz2  2 years and 6 months ago 719 main
conda 575.5 kB | osx-64/r-sctransform-0.3.4-r40h4e8cc12_0.tar.bz2  2 years and 6 months ago 389 main
conda 575.8 kB | osx-64/r-sctransform-0.3.4-r41h4e8cc12_0.tar.bz2  2 years and 6 months ago 360 main
conda 569.6 kB | linux-64/r-sctransform-0.3.4-r41hef8c1a7_0.tar.bz2  2 years and 6 months ago 4075 main
conda 569.5 kB | linux-64/r-sctransform-0.3.4-r40hef8c1a7_0.tar.bz2  2 years and 6 months ago 9764 main
conda 557.5 kB | win-64/r-sctransform-0.3.3-r41h8b0e7af_1.tar.bz2  3 years and 1 month ago 819 main
conda 569.6 kB | win-64/r-sctransform-0.3.3-r40h8b0e7af_1.tar.bz2  3 years and 1 month ago 723 main
conda 565.9 kB | osx-64/r-sctransform-0.3.3-r40h5e60f97_1.tar.bz2  3 years and 1 month ago 219 main
conda 565.9 kB | osx-64/r-sctransform-0.3.3-r41h5e60f97_1.tar.bz2  3 years and 1 month ago 474 main
conda 572.7 kB | linux-64/r-sctransform-0.3.3-r40hf361f1a_1.tar.bz2  3 years and 1 month ago 5542 main
conda 572.7 kB | linux-64/r-sctransform-0.3.3-r41hf361f1a_1.tar.bz2  3 years and 1 month ago 8556 main
conda 569.6 kB | win-64/r-sctransform-0.3.3-r40hfb8a20d_0.tar.bz2  3 years and 1 month ago 708 main
conda 557.1 kB | win-64/r-sctransform-0.3.3-r41hfb8a20d_0.tar.bz2  3 years and 1 month ago 716 main
conda 566.0 kB | osx-64/r-sctransform-0.3.3-r40he434708_0.tar.bz2  3 years and 1 month ago 92 main
conda 565.8 kB | osx-64/r-sctransform-0.3.3-r41he434708_0.tar.bz2  3 years and 1 month ago 92 main
conda 572.4 kB | linux-64/r-sctransform-0.3.3-r40h78ebb21_0.tar.bz2  3 years and 1 month ago 2128 main
conda 572.5 kB | linux-64/r-sctransform-0.3.3-r41h78ebb21_0.tar.bz2  3 years and 1 month ago 2191 main
conda 441.6 kB | win-64/r-sctransform-0.3.2-r41hfb8a20d_1.tar.bz2  3 years and 9 months ago 841 main
conda 454.9 kB | osx-64/r-sctransform-0.3.2-r41he434708_1.tar.bz2  3 years and 9 months ago 408 main
conda 455.9 kB | linux-64/r-sctransform-0.3.2-r41h78ebb21_1.tar.bz2  3 years and 9 months ago 4439 main
conda 451.2 kB | win-64/r-sctransform-0.3.2-r36hfb8a20d_1.tar.bz2  3 years and 9 months ago 894 main
conda 450.2 kB | win-64/r-sctransform-0.3.2-r40hfb8a20d_1.tar.bz2  3 years and 9 months ago 855 main
conda 455.5 kB | osx-64/r-sctransform-0.3.2-r36he434708_1.tar.bz2  3 years and 9 months ago 483 main
conda 454.8 kB | osx-64/r-sctransform-0.3.2-r40he434708_1.tar.bz2  3 years and 9 months ago 312 main
conda 456.8 kB | linux-64/r-sctransform-0.3.2-r36h78ebb21_1.tar.bz2  3 years and 9 months ago 7256 main
conda 455.7 kB | linux-64/r-sctransform-0.3.2-r40h78ebb21_1.tar.bz2  3 years and 9 months ago 3807 main
conda 450.1 kB | win-64/r-sctransform-0.3.2-r40he3aa7d2_0.tar.bz2  4 years and 2 months ago 940 main
conda 450.3 kB | win-64/r-sctransform-0.3.2-r36he3aa7d2_0.tar.bz2  4 years and 2 months ago 929 main
conda 454.6 kB | linux-64/r-sctransform-0.3.2-r40h34e6507_0.tar.bz2  4 years and 2 months ago 3873 main
conda 455.0 kB | osx-64/r-sctransform-0.3.2-r40hf695eb6_0.tar.bz2  4 years and 2 months ago 367 main
conda 455.6 kB | osx-64/r-sctransform-0.3.2-r36hf695eb6_0.tar.bz2  4 years and 2 months ago 385 main
conda 455.8 kB | linux-64/r-sctransform-0.3.2-r36h34e6507_0.tar.bz2  4 years and 2 months ago 3367 main
conda 417.9 kB | win-64/r-sctransform-0.3.1-r36he3aa7d2_1.tar.bz2  4 years and 4 months ago 960 main
conda 417.3 kB | win-64/r-sctransform-0.3.1-r40he3aa7d2_1.tar.bz2  4 years and 4 months ago 952 main
conda 418.0 kB | osx-64/r-sctransform-0.3.1-r40hc5079d1_1.tar.bz2  4 years and 4 months ago 307 main
conda 418.7 kB | osx-64/r-sctransform-0.3.1-r36hc5079d1_1.tar.bz2  4 years and 4 months ago 335 main
conda 415.4 kB | linux-64/r-sctransform-0.3.1-r40hdb2a40c_1.tar.bz2  4 years and 4 months ago 2890 main
conda 416.0 kB | linux-64/r-sctransform-0.3.1-r36hdb2a40c_1.tar.bz2  4 years and 4 months ago 3023 main
conda 417.4 kB | win-64/r-sctransform-0.3.1-r36h096a1c2_0.tar.bz2  4 years and 4 months ago 978 main
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