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A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for batch correction, and data correction. See Hafemeister and Satija 2019 <doi:10.1101/576827> for more details.

copied from cf-post-staging / r-sctransform
Type Size Name Uploaded Downloads Labels
conda 493.8 kB | win-64/r-sctransform-0.4.2-r44hec15cfb_0.conda  3 months and 23 days ago 127 main
conda 505.9 kB | win-64/r-sctransform-0.4.2-r43hec15cfb_0.conda  3 months and 23 days ago 84 main
conda 513.9 kB | osx-arm64/r-sctransform-0.4.2-r43hb5716f2_0.conda  3 months and 23 days ago 156 main
conda 506.2 kB | osx-64/r-sctransform-0.4.2-r44h8d9e291_0.conda  3 months and 23 days ago 141 main
conda 501.3 kB | linux-aarch64/r-sctransform-0.4.2-r44h36ba1ed_0.conda  3 months and 23 days ago 122 main
conda 513.4 kB | linux-aarch64/r-sctransform-0.4.2-r43h36ba1ed_0.conda  3 months and 23 days ago 172 main
conda 502.0 kB | osx-arm64/r-sctransform-0.4.2-r44hb5716f2_0.conda  3 months and 23 days ago 314 main
conda 517.6 kB | osx-64/r-sctransform-0.4.2-r43h8d9e291_0.conda  3 months and 23 days ago 138 main
conda 519.2 kB | linux-64/r-sctransform-0.4.2-r43hc2d650c_0.conda  3 months and 23 days ago 4509 main
conda 508.2 kB | linux-ppc64le/r-sctransform-0.4.2-r44he940c2a_0.conda  3 months and 23 days ago 17 main
conda 519.8 kB | linux-ppc64le/r-sctransform-0.4.2-r43he940c2a_0.conda  3 months and 23 days ago 22 main
conda 506.7 kB | linux-64/r-sctransform-0.4.2-r44hc2d650c_0.conda  3 months and 23 days ago 5162 main
conda 502.2 kB | win-64/r-sctransform-0.4.1-r43h3dc9324_1.conda  1 year and 1 month ago 556 main
conda 490.2 kB | win-64/r-sctransform-0.4.1-r44h3dc9324_1.conda  1 year and 1 month ago 471 main
conda 496.5 kB | linux-aarch64/r-sctransform-0.4.1-r44h5da6ed8_1.conda  1 year and 1 month ago 324 main
conda 512.1 kB | osx-arm64/r-sctransform-0.4.1-r43ha5f4c64_1.conda  1 year and 1 month ago 581 main
conda 499.3 kB | osx-arm64/r-sctransform-0.4.1-r44ha5f4c64_1.conda  1 year and 1 month ago 718 main
conda 514.4 kB | linux-ppc64le/r-sctransform-0.4.1-r43hee1cfac_1.conda  1 year and 1 month ago 251 main
conda 502.1 kB | osx-64/r-sctransform-0.4.1-r44hec4e08c_1.conda  1 year and 1 month ago 460 main
conda 515.7 kB | osx-64/r-sctransform-0.4.1-r43hec4e08c_1.conda  1 year and 1 month ago 593 main
conda 502.7 kB | linux-ppc64le/r-sctransform-0.4.1-r44hee1cfac_1.conda  1 year and 1 month ago 244 main
conda 508.7 kB | linux-aarch64/r-sctransform-0.4.1-r43h5da6ed8_1.conda  1 year and 1 month ago 423 main
conda 515.2 kB | linux-64/r-sctransform-0.4.1-r43hb424bfc_1.conda  1 year and 1 month ago 9992 main
conda 502.5 kB | linux-64/r-sctransform-0.4.1-r44hb424bfc_1.conda  1 year and 1 month ago 6806 main
conda 511.5 kB | linux-ppc64le/r-sctransform-0.4.1-r43hfc38db2_0.conda  1 year and 10 months ago 146 main

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