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A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for batch correction, and data correction. See Hafemeister and Satija 2019 <doi:10.1101/576827> for more details.

copied from cf-post-staging / r-sctransform
Type Size Name Uploaded Downloads Labels
conda 340.0 kB | win-64/r-sctransform-0.2.1-r35h796a38f_0.tar.bz2  5 years and 8 months ago 1165 main cf202003
conda 341.9 kB | win-64/r-sctransform-0.2.1-r36h796a38f_0.tar.bz2  5 years and 8 months ago 1206 main cf202003
conda 330.4 kB | osx-64/r-sctransform-0.2.1-r36hc5da6b9_0.tar.bz2  5 years and 8 months ago 525 main cf202003
conda 328.9 kB | osx-64/r-sctransform-0.2.1-r35hc5da6b9_0.tar.bz2  5 years and 8 months ago 438 main cf202003
conda 331.3 kB | linux-64/r-sctransform-0.2.1-r35h0357c0b_0.tar.bz2  5 years and 8 months ago 4335 main cf202003
conda 332.6 kB | linux-64/r-sctransform-0.2.1-r36h0357c0b_0.tar.bz2  5 years and 8 months ago 4588 main cf202003
conda 328.6 kB | win-64/r-sctransform-0.2.0-r36h796a38f_1.tar.bz2  6 years and 1 month ago 1416 main cf202003
conda 326.9 kB | win-64/r-sctransform-0.2.0-r35h796a38f_1.tar.bz2  6 years and 1 month ago 1395 main cf202003
conda 319.3 kB | osx-64/r-sctransform-0.2.0-r36hf99fc2c_1.tar.bz2  6 years and 1 month ago 508 main cf202003
conda 357.1 kB | osx-64/r-sctransform-0.2.0-r35hf99fc2c_1.tar.bz2  6 years and 1 month ago 440 main cf202003
conda 318.9 kB | linux-64/r-sctransform-0.2.0-r35h0357c0b_1.tar.bz2  6 years and 1 month ago 4533 main cf202003
conda 320.3 kB | linux-64/r-sctransform-0.2.0-r36h0357c0b_1.tar.bz2  6 years and 1 month ago 4812 main cf202003
conda 326.9 kB | win-64/r-sctransform-0.2.0-r351h6115d3f_0.tar.bz2  6 years and 4 months ago 1485 main cf202003
conda 356.5 kB | osx-64/r-sctransform-0.2.0-r351hf99fc2c_0.tar.bz2  6 years and 4 months ago 497 main cf202003
conda 319.0 kB | linux-64/r-sctransform-0.2.0-r351h0357c0b_0.tar.bz2  6 years and 4 months ago 5035 main cf202003

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