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R implementation of generalized survival models (GSMs), smooth accelerated failure time (AFT) models and Markov multi-state models. For the GSMs, g(S(t|x))=eta(t,x) for a link function g, survival S at time t with covariates x and a linear predictor eta(t,x). The main assumption is that the time effect(s) are smooth <doi:10.1177/0962280216664760>. For fully parametric models with natural splines, this re-implements Stata's 'stpm2' function, which are flexible parametric survival models developed by Royston and colleagues. We have extended the parametric models to include any smooth parametric smoothers for time. We have also extended the model to include any smooth penalized smoothers from the 'mgcv' package, using penalized likelihood. These models include left truncation, right censoring, interval censoring, gamma frailties and normal random effects <doi:10.1002/sim.7451>. For the smooth AFTs, S(t|x) = S_0(t*eta(t,x)), where the baseline survival function S_0(t)=exp(-exp(eta_0(t))) is modelled for natural splines for eta_0, and the time-dependent cumulative acceleration factor eta(t,x)=\int_0^t exp(eta_1(u,x)) du for log acceleration factor eta_1(u,x). The Markov multi-state models allow for a range of models with smooth transitions to predict transition probabilities, length of stay, utilities and costs, with differences, ratios and standardisation.

copied from cf-staging / r-rstpm2
Type Size Name Uploaded Downloads Labels
conda 4.0 MB | win-64/r-rstpm2-1.6.6.1-r43h891d650_0.conda  2 months and 21 days ago 316 main
conda 4.0 MB | win-64/r-rstpm2-1.6.6.1-r44h891d650_0.conda  2 months and 21 days ago 365 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.6.1-r43h9c54416_0.conda  2 months and 21 days ago 215 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.6.1-r44h9c54416_0.conda  2 months and 21 days ago 217 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.6.1-r44h773be8d_0.conda  2 months and 21 days ago 454 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.6.1-r43h773be8d_0.conda  2 months and 21 days ago 453 main
conda 4.0 MB | win-64/r-rstpm2-1.6.6-r43h891d650_0.conda  4 months and 17 days ago 283 main
conda 4.0 MB | win-64/r-rstpm2-1.6.6-r44h891d650_0.conda  4 months and 17 days ago 281 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.6-r44h9c54416_0.conda  4 months and 17 days ago 226 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.6-r43h9c54416_0.conda  4 months and 17 days ago 206 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.6-r43h773be8d_0.conda  4 months and 17 days ago 586 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.6-r44h773be8d_0.conda  4 months and 17 days ago 563 main
conda 4.0 MB | win-64/r-rstpm2-1.6.5-r44h891d650_0.conda  6 months and 24 days ago 467 main
conda 4.0 MB | win-64/r-rstpm2-1.6.5-r43h891d650_0.conda  6 months and 24 days ago 485 main
conda 4.1 MB | osx-64/r-rstpm2-1.6.5-r44hc039d2b_0.conda  6 months and 24 days ago 378 main
conda 4.1 MB | osx-64/r-rstpm2-1.6.5-r43hc039d2b_0.conda  6 months and 24 days ago 414 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.5-r44h2ee40c2_0.conda  6 months and 24 days ago 939 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.5-r43h2ee40c2_0.conda  6 months and 24 days ago 985 main
conda 4.0 MB | win-64/r-rstpm2-1.6.4-r44h891d650_0.conda  6 months and 25 days ago 497 main
conda 4.0 MB | win-64/r-rstpm2-1.6.4-r43h891d650_0.conda  6 months and 25 days ago 459 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.4-r43hc039d2b_0.conda  6 months and 25 days ago 388 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.4-r44hc039d2b_0.conda  6 months and 25 days ago 384 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.4-r43h2ee40c2_0.conda  6 months and 25 days ago 941 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.4-r44h2ee40c2_0.conda  6 months and 25 days ago 902 main
conda 4.0 MB | win-64/r-rstpm2-1.6.3-r43h891d650_1.conda  8 months and 3 days ago 454 main
conda 4.0 MB | win-64/r-rstpm2-1.6.3-r44h891d650_1.conda  8 months and 3 days ago 495 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.3-r43h2ee40c2_1.conda  8 months and 3 days ago 1084 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.3-r43hc039d2b_1.conda  8 months and 3 days ago 418 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.3-r44hc039d2b_1.conda  8 months and 3 days ago 379 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.3-r44h2ee40c2_1.conda  8 months and 3 days ago 1079 main
conda 4.0 MB | win-64/r-rstpm2-1.6.3-r41h30befbe_0.conda  1 year and 3 months ago 519 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.3-r42h3a810b1_0.conda  1 year and 3 months ago 467 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.3-r43h3a810b1_0.conda  1 year and 3 months ago 445 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.3-r42h9f9f741_0.conda  1 year and 3 months ago 1417 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.3-r43h9f9f741_0.conda  1 year and 3 months ago 1555 main
conda 2.3 MB | win-64/r-rstpm2-1.6.2-r41h30befbe_1.conda  1 year and 9 months ago 708 main
conda 2.4 MB | osx-64/r-rstpm2-1.6.2-r42h41c508b_1.conda  1 year and 9 months ago 446 main
conda 2.4 MB | osx-64/r-rstpm2-1.6.2-r43h41c508b_1.conda  1 year and 9 months ago 391 main
conda 2.3 MB | linux-64/r-rstpm2-1.6.2-r42h9f9f741_1.conda  1 year and 9 months ago 1593 main
conda 2.3 MB | linux-64/r-rstpm2-1.6.2-r43h9f9f741_1.conda  1 year and 9 months ago 1681 main
conda 2.3 MB | win-64/r-rstpm2-1.6.2-r41h30befbe_0.conda  2 years and 8 days ago 794 main
conda 2.4 MB | osx-64/r-rstpm2-1.6.2-r42hcfa4a20_0.conda  2 years and 8 days ago 418 main
conda 2.4 MB | osx-64/r-rstpm2-1.6.2-r41hcfa4a20_0.conda  2 years and 8 days ago 417 main
conda 2.3 MB | linux-64/r-rstpm2-1.6.2-r42h6d9afb5_0.conda  2 years and 8 days ago 1825 main
conda 2.3 MB | linux-64/r-rstpm2-1.6.2-r41h6d9afb5_0.conda  2 years and 8 days ago 1859 main
conda 2.3 MB | win-64/r-rstpm2-1.6.1-r41h30befbe_0.conda  2 years and 16 days ago 846 main
conda 2.4 MB | osx-64/r-rstpm2-1.6.1-r41hcfa4a20_0.conda  2 years and 16 days ago 419 main
conda 2.4 MB | osx-64/r-rstpm2-1.6.1-r42hcfa4a20_0.conda  2 years and 16 days ago 414 main
conda 2.3 MB | linux-64/r-rstpm2-1.6.1-r42h6d9afb5_0.conda  2 years and 16 days ago 1816 main
conda 2.3 MB | linux-64/r-rstpm2-1.6.1-r41h6d9afb5_0.conda  2 years and 16 days ago 1744 main

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