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R implementation of generalized survival models (GSMs), smooth accelerated failure time (AFT) models and Markov multi-state models. For the GSMs, g(S(t|x))=eta(t,x) for a link function g, survival S at time t with covariates x and a linear predictor eta(t,x). The main assumption is that the time effect(s) are smooth <doi:10.1177/0962280216664760>. For fully parametric models with natural splines, this re-implements Stata's 'stpm2' function, which are flexible parametric survival models developed by Royston and colleagues. We have extended the parametric models to include any smooth parametric smoothers for time. We have also extended the model to include any smooth penalized smoothers from the 'mgcv' package, using penalized likelihood. These models include left truncation, right censoring, interval censoring, gamma frailties and normal random effects <doi:10.1002/sim.7451>. For the smooth AFTs, S(t|x) = S_0(t*eta(t,x)), where the baseline survival function S_0(t)=exp(-exp(eta_0(t))) is modelled for natural splines for eta_0, and the time-dependent cumulative acceleration factor eta(t,x)=\int_0^t exp(eta_1(u,x)) du for log acceleration factor eta_1(u,x). The Markov multi-state models allow for a range of models with smooth transitions to predict transition probabilities, length of stay, utilities and costs, with differences, ratios and standardisation.

copied from cf-staging / r-rstpm2
Type Size Name Uploaded Downloads Labels
conda 4.0 MB | win-64/r-rstpm2-1.6.6-r43h891d650_0.conda  1 month and 13 days ago 24 main
conda 4.0 MB | win-64/r-rstpm2-1.6.6-r44h891d650_0.conda  1 month and 13 days ago 22 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.6-r44h9c54416_0.conda  1 month and 13 days ago 19 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.6-r43h9c54416_0.conda  1 month and 13 days ago 17 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.6-r43h773be8d_0.conda  1 month and 13 days ago 203 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.6-r44h773be8d_0.conda  1 month and 13 days ago 166 main
conda 4.0 MB | win-64/r-rstpm2-1.6.5-r44h891d650_0.conda  3 months and 23 days ago 191 main
conda 4.0 MB | win-64/r-rstpm2-1.6.5-r43h891d650_0.conda  3 months and 23 days ago 199 main
conda 4.1 MB | osx-64/r-rstpm2-1.6.5-r44hc039d2b_0.conda  3 months and 23 days ago 175 main
conda 4.1 MB | osx-64/r-rstpm2-1.6.5-r43hc039d2b_0.conda  3 months and 23 days ago 202 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.5-r44h2ee40c2_0.conda  3 months and 23 days ago 549 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.5-r43h2ee40c2_0.conda  3 months and 23 days ago 591 main
conda 4.0 MB | win-64/r-rstpm2-1.6.4-r44h891d650_0.conda  3 months and 24 days ago 201 main
conda 4.0 MB | win-64/r-rstpm2-1.6.4-r43h891d650_0.conda  3 months and 24 days ago 191 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.4-r43hc039d2b_0.conda  3 months and 24 days ago 196 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.4-r44hc039d2b_0.conda  3 months and 24 days ago 185 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.4-r43h2ee40c2_0.conda  3 months and 24 days ago 552 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.4-r44h2ee40c2_0.conda  3 months and 24 days ago 560 main
conda 4.0 MB | win-64/r-rstpm2-1.6.3-r43h891d650_1.conda  5 months and 11 hours ago 212 main
conda 4.0 MB | win-64/r-rstpm2-1.6.3-r44h891d650_1.conda  5 months and 12 hours ago 214 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.3-r43h2ee40c2_1.conda  5 months and 12 hours ago 689 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.3-r43hc039d2b_1.conda  5 months and 12 hours ago 216 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.3-r44hc039d2b_1.conda  5 months and 12 hours ago 194 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.3-r44h2ee40c2_1.conda  5 months and 12 hours ago 667 main
conda 4.0 MB | win-64/r-rstpm2-1.6.3-r41h30befbe_0.conda  1 year and 8 days ago 269 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.3-r42h3a810b1_0.conda  1 year and 8 days ago 265 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.3-r43h3a810b1_0.conda  1 year and 8 days ago 250 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.3-r42h9f9f741_0.conda  1 year and 8 days ago 1068 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.3-r43h9f9f741_0.conda  1 year and 8 days ago 1158 main
conda 2.3 MB | win-64/r-rstpm2-1.6.2-r41h30befbe_1.conda  1 year and 5 months ago 444 main
conda 2.4 MB | osx-64/r-rstpm2-1.6.2-r42h41c508b_1.conda  1 year and 5 months ago 239 main
conda 2.4 MB | osx-64/r-rstpm2-1.6.2-r43h41c508b_1.conda  1 year and 5 months ago 208 main
conda 2.3 MB | linux-64/r-rstpm2-1.6.2-r42h9f9f741_1.conda  1 year and 5 months ago 1225 main
conda 2.3 MB | linux-64/r-rstpm2-1.6.2-r43h9f9f741_1.conda  1 year and 5 months ago 1281 main
conda 2.3 MB | win-64/r-rstpm2-1.6.2-r41h30befbe_0.conda  1 year and 9 months ago 529 main
conda 2.4 MB | osx-64/r-rstpm2-1.6.2-r42hcfa4a20_0.conda  1 year and 9 months ago 213 main
conda 2.4 MB | osx-64/r-rstpm2-1.6.2-r41hcfa4a20_0.conda  1 year and 9 months ago 211 main
conda 2.3 MB | linux-64/r-rstpm2-1.6.2-r42h6d9afb5_0.conda  1 year and 9 months ago 1438 main
conda 2.3 MB | linux-64/r-rstpm2-1.6.2-r41h6d9afb5_0.conda  1 year and 9 months ago 1450 main
conda 2.3 MB | win-64/r-rstpm2-1.6.1-r41h30befbe_0.conda  1 year and 9 months ago 535 main
conda 2.4 MB | osx-64/r-rstpm2-1.6.1-r41hcfa4a20_0.conda  1 year and 9 months ago 217 main
conda 2.4 MB | osx-64/r-rstpm2-1.6.1-r42hcfa4a20_0.conda  1 year and 9 months ago 217 main
conda 2.3 MB | linux-64/r-rstpm2-1.6.1-r42h6d9afb5_0.conda  1 year and 9 months ago 1434 main
conda 2.3 MB | linux-64/r-rstpm2-1.6.1-r41h6d9afb5_0.conda  1 year and 9 months ago 1382 main
conda 2.2 MB | win-64/r-rstpm2-1.5.9-r41h30befbe_0.conda  1 year and 11 months ago 612 main
conda 2.2 MB | osx-64/r-rstpm2-1.5.9-r41hcfa4a20_0.conda  1 year and 11 months ago 233 main
conda 2.2 MB | osx-64/r-rstpm2-1.5.9-r42hcfa4a20_0.conda  1 year and 11 months ago 229 main
conda 2.2 MB | linux-64/r-rstpm2-1.5.9-r41h6d9afb5_0.conda  1 year and 11 months ago 1481 main
conda 2.2 MB | linux-64/r-rstpm2-1.5.9-r42h6d9afb5_0.conda  1 year and 11 months ago 1505 main
conda 2.4 MB | win-64/r-rstpm2-1.5.8-r41h30befbe_0.tar.bz2  2 years and 1 month ago 515 main

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