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Provides quality control (QC), normalization, and batch effect correction operations for 'NanoString nCounter' data, Talhouk et al. (2016) <doi:10.1371/journal.pone.0153844>. Various metrics are used to determine which samples passed or failed QC. Gene expression should first be normalized to housekeeping genes, before a reference-based approach is used to adjust for batch effects. Raw NanoString data can be imported in the form of Reporter Code Count (RCC) files.

copied from cf-staging / r-nanostringr
Type Size Name Uploaded Downloads Labels
conda 309.1 kB | noarch/r-nanostringr-0.2.0-r41hc72bb7e_0.tar.bz2  3 years and 6 months ago 1976 main
conda 308.7 kB | noarch/r-nanostringr-0.2.0-r40hc72bb7e_0.tar.bz2  3 years and 10 months ago 2138 main
conda 308.7 kB | noarch/r-nanostringr-0.2.0-r36hc72bb7e_0.tar.bz2  3 years and 10 months ago 2176 main

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