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Given a group of genomes and their relationship with each other, the package clusters the genomes and selects the most representative members of each cluster. Additional data can be provided to the prioritize certain genomes. The results can be printed out as a list or a new phylogeny with graphs of the trees and distance distributions also available. For detailed introduction see: Thomas H Clarke, Lauren M Brinkac, Granger Sutton, and Derrick E Fouts (2018), GGRaSP: a R-package for selecting representative genomes using Gaussian mixture models, Bioinformatics, bty300, <doi:10.1093/bioinformatics/bty300>.

copied from cf-staging / r-ggrasp
Type Size Name Uploaded Downloads Labels
conda 889.5 kB | noarch/r-ggrasp-1.2-r44hc72bb7e_3.conda  3 months and 16 days ago 354 main
conda 885.0 kB | noarch/r-ggrasp-1.2-r43hc72bb7e_3.conda  3 months and 16 days ago 353 main
conda 889.8 kB | noarch/r-ggrasp-1.2-r43hc72bb7e_2.conda  1 year and 5 months ago 890 main
conda 880.3 kB | noarch/r-ggrasp-1.2-r42hc72bb7e_2.conda  1 year and 5 months ago 916 main
conda 1.3 MB | noarch/r-ggrasp-1.2-r42hc72bb7e_1.tar.bz2  2 years and 1 month ago 1242 main
conda 1.3 MB | noarch/r-ggrasp-1.2-r41hc72bb7e_1.tar.bz2  2 years and 1 month ago 1256 main
conda 1.3 MB | noarch/r-ggrasp-1.2-r40hc72bb7e_0.tar.bz2  2 years and 7 months ago 1841 main
conda 1.3 MB | noarch/r-ggrasp-1.2-r41hc72bb7e_0.tar.bz2  2 years and 7 months ago 1840 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r40hc72bb7e_1.tar.bz2  3 years and 6 months ago 1923 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r41hc72bb7e_1.tar.bz2  3 years and 6 months ago 1923 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r40h6115d3f_1.tar.bz2  4 years and 7 months ago 2777 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r36h6115d3f_1.tar.bz2  4 years and 7 months ago 2776 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r36h6115d3f_0.tar.bz2  5 years and 2 months ago 3465 main cf202003
conda 1.2 MB | noarch/r-ggrasp-1.0-r35h6115d3f_0.tar.bz2  5 years and 2 months ago 3479 main cf202003

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