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Given a group of genomes and their relationship with each other, the package clusters the genomes and selects the most representative members of each cluster. Additional data can be provided to the prioritize certain genomes. The results can be printed out as a list or a new phylogeny with graphs of the trees and distance distributions also available. For detailed introduction see: Thomas H Clarke, Lauren M Brinkac, Granger Sutton, and Derrick E Fouts (2018), GGRaSP: a R-package for selecting representative genomes using Gaussian mixture models, Bioinformatics, bty300, <doi:10.1093/bioinformatics/bty300>.

copied from cf-staging / r-ggrasp
Type Size Name Uploaded Downloads Labels
conda 889.5 kB | noarch/r-ggrasp-1.2-r44hc72bb7e_3.conda  3 months and 16 days ago 352 main
conda 885.0 kB | noarch/r-ggrasp-1.2-r43hc72bb7e_3.conda  3 months and 16 days ago 352 main
conda 889.8 kB | noarch/r-ggrasp-1.2-r43hc72bb7e_2.conda  1 year and 5 months ago 888 main
conda 880.3 kB | noarch/r-ggrasp-1.2-r42hc72bb7e_2.conda  1 year and 5 months ago 914 main
conda 1.3 MB | noarch/r-ggrasp-1.2-r42hc72bb7e_1.tar.bz2  2 years and 1 month ago 1240 main
conda 1.3 MB | noarch/r-ggrasp-1.2-r41hc72bb7e_1.tar.bz2  2 years and 1 month ago 1254 main
conda 1.3 MB | noarch/r-ggrasp-1.2-r40hc72bb7e_0.tar.bz2  2 years and 7 months ago 1839 main
conda 1.3 MB | noarch/r-ggrasp-1.2-r41hc72bb7e_0.tar.bz2  2 years and 7 months ago 1839 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r40hc72bb7e_1.tar.bz2  3 years and 6 months ago 1921 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r41hc72bb7e_1.tar.bz2  3 years and 6 months ago 1921 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r40h6115d3f_1.tar.bz2  4 years and 7 months ago 2775 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r36h6115d3f_1.tar.bz2  4 years and 7 months ago 2775 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r36h6115d3f_0.tar.bz2  5 years and 2 months ago 3464 main cf202003
conda 1.2 MB | noarch/r-ggrasp-1.0-r35h6115d3f_0.tar.bz2  5 years and 2 months ago 3478 main cf202003

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