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Provides an implementation of the framework of reversed graph embedding (RGE) which projects data into a reduced dimensional space while constructs a principal tree which passes through the middle of the data simultaneously. DDRTree shows superiority to alternatives (Wishbone, DPT) for inferring the ordering as well as the intrinsic structure of the single cell genomics data. In general, it could be used to reconstruct the temporal progression as well as bifurcation structure of any datatype.

copied from cf-staging / r-ddrtree
Type Size Name Uploaded Downloads Labels
conda 176.0 kB | win-64/r-ddrtree-0.1.5-r43h8ae3a7c_1007.conda  1 year and 1 month ago 258 main
conda 176.5 kB | win-64/r-ddrtree-0.1.5-r44h8ae3a7c_1007.conda  1 year and 1 month ago 302 main
conda 204.4 kB | osx-64/r-ddrtree-0.1.5-r43h25d921d_1007.conda  1 year and 1 month ago 247 main
conda 245.3 kB | linux-ppc64le/r-ddrtree-0.1.5-r44h4f8ea88_1007.conda  1 year and 1 month ago 142 main
conda 205.6 kB | osx-64/r-ddrtree-0.1.5-r44h25d921d_1007.conda  1 year and 1 month ago 245 main
conda 244.2 kB | linux-ppc64le/r-ddrtree-0.1.5-r43h4f8ea88_1007.conda  1 year and 1 month ago 142 main
conda 193.1 kB | linux-aarch64/r-ddrtree-0.1.5-r43h7d3bd7d_1007.conda  1 year and 1 month ago 349 main
conda 193.9 kB | linux-aarch64/r-ddrtree-0.1.5-r44h7d3bd7d_1007.conda  1 year and 1 month ago 185 main
conda 203.5 kB | linux-64/r-ddrtree-0.1.5-r44h0d4f4ea_1007.conda  1 year and 1 month ago 1699 main
conda 202.5 kB | linux-64/r-ddrtree-0.1.5-r43h0d4f4ea_1007.conda  1 year and 1 month ago 2002 main
conda 205.4 kB | linux-ppc64le/r-ddrtree-0.1.5-r42h46f38da_1006.conda  2 years and 12 days ago 145 main
conda 205.9 kB | linux-ppc64le/r-ddrtree-0.1.5-r43h46f38da_1006.conda  2 years and 12 days ago 156 main
conda 174.5 kB | linux-aarch64/r-ddrtree-0.1.5-r42h2f0025b_1006.conda  2 years and 12 days ago 156 main
conda 175.0 kB | linux-aarch64/r-ddrtree-0.1.5-r43h2f0025b_1006.conda  2 years and 12 days ago 141 main
conda 150.7 kB | win-64/r-ddrtree-0.1.5-r41hfa435f1_1006.conda  2 years and 2 months ago 485 main
conda 203.5 kB | osx-64/r-ddrtree-0.1.5-r42he965462_1006.conda  2 years and 2 months ago 267 main
conda 203.2 kB | osx-64/r-ddrtree-0.1.5-r43he965462_1006.conda  2 years and 2 months ago 234 main
conda 183.7 kB | linux-64/r-ddrtree-0.1.5-r43h59595ed_1006.conda  2 years and 2 months ago 2334 main
conda 184.2 kB | linux-64/r-ddrtree-0.1.5-r42h59595ed_1006.conda  2 years and 2 months ago 2020 main
conda 164.6 kB | win-64/r-ddrtree-0.1.5-r41hfa435f1_1005.tar.bz2  2 years and 10 months ago 552 main
conda 225.0 kB | osx-64/r-ddrtree-0.1.5-r42hf0c8a7f_1005.tar.bz2  2 years and 10 months ago 96 main
conda 224.9 kB | osx-64/r-ddrtree-0.1.5-r41hf0c8a7f_1005.tar.bz2  2 years and 10 months ago 100 main
conda 195.9 kB | linux-64/r-ddrtree-0.1.5-r41h27087fc_1005.tar.bz2  2 years and 10 months ago 2748 main
conda 196.2 kB | linux-64/r-ddrtree-0.1.5-r42h27087fc_1005.tar.bz2  2 years and 10 months ago 2384 main
conda 166.9 kB | win-64/r-ddrtree-0.1.5-r40hfa435f1_1004.tar.bz2  4 years and 3 months ago 815 main

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