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conda-forge / packages / r-cooccur

This R package applies the probabilistic model of species co-occurrence (Veech 2013) to a set of species distributed among a set of survey or sampling sites. The algorithm calculates the observed and expected frequencies of co-occurrence between each pair of species. The expected frequency is based on the distribution of each species being random and independent of the other species. The analysis returns the probabilities that a more extreme (either low or high) value of co-occurrence could have been obtained by chance. The package also includes functions for visualizing species co-occurrence results and preparing data for downstream analyses.

copied from cf-staging / r-cooccur

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Type Size Name Uploaded Downloads Labels
conda 101.5 kB | win-64/r-cooccur-1.3-r44h11b023d_1006.conda  4 months and 23 days ago 141 main
conda 100.4 kB | win-64/r-cooccur-1.3-r43h11b023d_1006.conda  4 months and 23 days ago 126 main
conda 100.2 kB | osx-64/r-cooccur-1.3-r43h6b9d099_1006.conda  4 months and 23 days ago 127 main
conda 101.3 kB | osx-64/r-cooccur-1.3-r44h6b9d099_1006.conda  4 months and 23 days ago 129 main
conda 99.6 kB | linux-64/r-cooccur-1.3-r43hdb488b9_1006.conda  4 months and 23 days ago 605 main
conda 100.4 kB | linux-64/r-cooccur-1.3-r44hdb488b9_1006.conda  4 months and 23 days ago 564 main
conda 100.1 kB | win-64/r-cooccur-1.3-r41h6d2157b_1005.conda  1 year and 5 months ago 364 main
conda 99.7 kB | osx-64/r-cooccur-1.3-r42h6dc245f_1005.conda  1 year and 5 months ago 149 main
conda 99.8 kB | osx-64/r-cooccur-1.3-r43h6dc245f_1005.conda  1 year and 5 months ago 148 main
conda 99.0 kB | linux-64/r-cooccur-1.3-r42h57805ef_1005.conda  1 year and 5 months ago 1162 main
conda 99.3 kB | linux-64/r-cooccur-1.3-r43h57805ef_1005.conda  1 year and 5 months ago 1194 main
conda 101.3 kB | win-64/r-cooccur-1.3-r41h6d2157b_1004.tar.bz2  2 years and 1 month ago 528 main
conda 101.2 kB | osx-64/r-cooccur-1.3-r41h815d134_1004.tar.bz2  2 years and 1 month ago 72 main
conda 101.4 kB | osx-64/r-cooccur-1.3-r42h815d134_1004.tar.bz2  2 years and 1 month ago 73 main
conda 101.4 kB | linux-64/r-cooccur-1.3-r42h06615bd_1004.tar.bz2  2 years and 1 month ago 1525 main
conda 101.2 kB | linux-64/r-cooccur-1.3-r41h06615bd_1004.tar.bz2  2 years and 1 month ago 1601 main
conda 100.4 kB | win-64/r-cooccur-1.3-r41h6d2157b_1003.tar.bz2  3 years and 6 months ago 781 main
conda 106.5 kB | win-64/r-cooccur-1.3-r40h6d2157b_1003.tar.bz2  3 years and 6 months ago 788 main
conda 100.1 kB | osx-64/r-cooccur-1.3-r40h28b5c78_1003.tar.bz2  3 years and 6 months ago 132 main
conda 100.0 kB | osx-64/r-cooccur-1.3-r41h28b5c78_1003.tar.bz2  3 years and 6 months ago 129 main
conda 100.6 kB | linux-64/r-cooccur-1.3-r40hcfec24a_1003.tar.bz2  3 years and 6 months ago 2149 main
conda 100.6 kB | linux-64/r-cooccur-1.3-r41hcfec24a_1003.tar.bz2  3 years and 6 months ago 2179 main
conda 106.3 kB | win-64/r-cooccur-1.3-r36hda5aaf8_1003.tar.bz2  4 years and 7 months ago 1009 main
conda 105.7 kB | win-64/r-cooccur-1.3-r40hda5aaf8_1003.tar.bz2  4 years and 7 months ago 1021 main
conda 100.0 kB | osx-64/r-cooccur-1.3-r40h17f1fa6_1003.tar.bz2  4 years and 7 months ago 329 main
conda 100.3 kB | osx-64/r-cooccur-1.3-r36h17f1fa6_1003.tar.bz2  4 years and 7 months ago 312 main
conda 100.4 kB | linux-64/r-cooccur-1.3-r36hcdcec82_1003.tar.bz2  4 years and 7 months ago 2818 main
conda 99.8 kB | linux-64/r-cooccur-1.3-r40hcdcec82_1003.tar.bz2  4 years and 7 months ago 2802 main
conda 105.7 kB | win-64/r-cooccur-1.3-r36hda5aaf8_1002.tar.bz2  5 years and 4 months ago 1353 main cf202003
conda 104.5 kB | win-64/r-cooccur-1.3-r35hda5aaf8_1002.tar.bz2  5 years and 4 months ago 1376 main cf202003
conda 98.3 kB | osx-64/r-cooccur-1.3-r35h159158b_1002.tar.bz2  5 years and 4 months ago 356 main cf202003
conda 99.1 kB | osx-64/r-cooccur-1.3-r36h159158b_1002.tar.bz2  5 years and 4 months ago 352 main cf202003
conda 99.0 kB | linux-64/r-cooccur-1.3-r35hcdcec82_1002.tar.bz2  5 years and 4 months ago 3612 main cf202003
conda 100.0 kB | linux-64/r-cooccur-1.3-r36hcdcec82_1002.tar.bz2  5 years and 4 months ago 3634 main cf202003
conda 98.7 kB | linux-64/r-cooccur-1.3-r351h96ca727_1001.tar.bz2  6 years and 19 days ago 4415 main gcc7 cf202003
conda 98.3 kB | linux-64/r-cooccur-1.3-r351hc070d10_1.tar.bz2  6 years and 19 days ago 4322 main cf202003 cf201901
conda 98.4 kB | osx-64/r-cooccur-1.3-r351h46e59ec_1001.tar.bz2  6 years and 19 days ago 360 main gcc7 cf202003
conda 98.3 kB | osx-64/r-cooccur-1.3-r351hc070d10_1.tar.bz2  6 years and 19 days ago 351 main cf202003 cf201901
conda 104.1 kB | win-64/r-cooccur-1.3-r351h6115d3f_1001.tar.bz2  6 years and 19 days ago 1652 main cf202003 cf201901
conda 70.4 kB | osx-64/r-cooccur-1.3-r341h46e59ec_1.tar.bz2  6 years and 4 months ago 346 main cf202003 cf201901
conda 70.4 kB | linux-64/r-cooccur-1.3-r341h96ca727_1.tar.bz2  6 years and 4 months ago 4569 main cf202003 cf201901
conda 70.2 kB | osx-64/r-cooccur-1.3-r341h6115d3f_0.tar.bz2  6 years and 4 months ago 359 main cf202003 cf201901
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