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This R package applies the probabilistic model of species co-occurrence (Veech 2013) to a set of species distributed among a set of survey or sampling sites. The algorithm calculates the observed and expected frequencies of co-occurrence between each pair of species. The expected frequency is based on the distribution of each species being random and independent of the other species. The analysis returns the probabilities that a more extreme (either low or high) value of co-occurrence could have been obtained by chance. The package also includes functions for visualizing species co-occurrence results and preparing data for downstream analyses.

copied from cf-staging / r-cooccur
Type Size Name Uploaded Downloads Labels
conda 101.5 kB | win-64/r-cooccur-1.3-r44h11b023d_1006.conda  8 months and 7 days ago 276 main
conda 100.4 kB | win-64/r-cooccur-1.3-r43h11b023d_1006.conda  8 months and 7 days ago 255 main
conda 100.2 kB | osx-64/r-cooccur-1.3-r43h6b9d099_1006.conda  8 months and 7 days ago 206 main
conda 101.3 kB | osx-64/r-cooccur-1.3-r44h6b9d099_1006.conda  8 months and 7 days ago 212 main
conda 99.6 kB | linux-64/r-cooccur-1.3-r43hdb488b9_1006.conda  8 months and 7 days ago 941 main
conda 100.4 kB | linux-64/r-cooccur-1.3-r44hdb488b9_1006.conda  8 months and 7 days ago 911 main
conda 100.1 kB | win-64/r-cooccur-1.3-r41h6d2157b_1005.conda  1 year and 9 months ago 483 main
conda 99.7 kB | osx-64/r-cooccur-1.3-r42h6dc245f_1005.conda  1 year and 9 months ago 222 main
conda 99.8 kB | osx-64/r-cooccur-1.3-r43h6dc245f_1005.conda  1 year and 9 months ago 239 main
conda 99.0 kB | linux-64/r-cooccur-1.3-r42h57805ef_1005.conda  1 year and 9 months ago 1485 main
conda 99.3 kB | linux-64/r-cooccur-1.3-r43h57805ef_1005.conda  1 year and 9 months ago 1509 main
conda 101.3 kB | win-64/r-cooccur-1.3-r41h6d2157b_1004.tar.bz2  2 years and 5 months ago 535 main
conda 101.2 kB | osx-64/r-cooccur-1.3-r41h815d134_1004.tar.bz2  2 years and 5 months ago 73 main
conda 101.4 kB | osx-64/r-cooccur-1.3-r42h815d134_1004.tar.bz2  2 years and 5 months ago 74 main
conda 101.4 kB | linux-64/r-cooccur-1.3-r42h06615bd_1004.tar.bz2  2 years and 5 months ago 1809 main
conda 101.2 kB | linux-64/r-cooccur-1.3-r41h06615bd_1004.tar.bz2  2 years and 5 months ago 1882 main
conda 100.4 kB | win-64/r-cooccur-1.3-r41h6d2157b_1003.tar.bz2  3 years and 10 months ago 788 main
conda 106.5 kB | win-64/r-cooccur-1.3-r40h6d2157b_1003.tar.bz2  3 years and 10 months ago 795 main
conda 100.1 kB | osx-64/r-cooccur-1.3-r40h28b5c78_1003.tar.bz2  3 years and 10 months ago 132 main
conda 100.0 kB | osx-64/r-cooccur-1.3-r41h28b5c78_1003.tar.bz2  3 years and 10 months ago 129 main
conda 100.6 kB | linux-64/r-cooccur-1.3-r40hcfec24a_1003.tar.bz2  3 years and 10 months ago 2420 main
conda 100.6 kB | linux-64/r-cooccur-1.3-r41hcfec24a_1003.tar.bz2  3 years and 10 months ago 2450 main
conda 106.3 kB | win-64/r-cooccur-1.3-r36hda5aaf8_1003.tar.bz2  4 years and 10 months ago 1014 main
conda 105.7 kB | win-64/r-cooccur-1.3-r40hda5aaf8_1003.tar.bz2  4 years and 10 months ago 1027 main
conda 100.0 kB | osx-64/r-cooccur-1.3-r40h17f1fa6_1003.tar.bz2  4 years and 10 months ago 329 main

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