Efficient phylogenetic analyses on massive phylogenies comprising up to millions of tips. Functions include pruning, rerooting, calculation of most-recent common ancestors, calculating distances from the tree root and calculating pairwise distances. Calculation of phylogenetic signal and mean trait depth (trait conservatism), ancestral state reconstruction and hidden character prediction of discrete characters, simulating and fitting models of trait evolution, fitting and simulating diversification models, dating trees, comparing trees, and reading/writing trees in Newick format. Citation: Louca, Stilianos and Doebeli, Michael (2017) <doi:10.1093/bioinformatics/btx701>.

  • License: GPL-2.0-or-later
  • 33473 total downloads
  • Last upload: 16 days and 14 hours ago

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.6.2
  • osx-64  v1.6.2
  • win-64  v1.6.2
To install this package with conda run one of the following:
conda install -c conda-forge r-castor
conda install -c conda-forge/label/gcc7 r-castor
conda install -c conda-forge/label/broken r-castor
conda install -c conda-forge/label/cf201901 r-castor
conda install -c conda-forge/label/cf202003 r-castor

Description

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