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A Variant Call Format (VCF) v4.0 and v4.1 parser for Python.

copied from cf-staging / pyvcf

Installers

Info: This package contains files in non-standard labels.
  • linux-64 v0.6.8
  • osx-64 v0.6.8
  • win-64 v0.6.8
  • linux-aarch64 v0.6.8
  • linux-ppc64le v0.6.8

conda install

To install this package run one of the following:
conda install conda-forge::pyvcf
conda install conda-forge/label/cf201901::pyvcf
conda install conda-forge/label/cf202003::pyvcf

Description

The intent of this module is to mimic the csv module in the Python stdlib, as opposed to more flexible serialization formats like JSON or YAML. vcf will attempt to parse the content of each record based on the data types specified in the meta-information lines -- specifically the ##INFO and ##FORMAT lines. If these lines are missing or incomplete, it will check against the reserved types mentioned in the spec. Failing that, it will just return strings.


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