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pyvcf

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A Variant Call Format (VCF) v4.0 and v4.1 parser for Python.

Installation

To install this package, run one of the following:

Conda
$conda install conda-forge::pyvcf

Usage Tracking

0.6.8
1 / 8 versions selected
Downloads (Last 6 months): 0

Description

The intent of this module is to mimic the csv module in the Python stdlib, as opposed to more flexible serialization formats like JSON or YAML. vcf will attempt to parse the content of each record based on the data types specified in the meta-information lines -- specifically the ##INFO and ##FORMAT lines. If these lines are missing or incomplete, it will check against the reserved types mentioned in the spec. Failing that, it will just return strings.

About

Summary

A Variant Call Format (VCF) v4.0 and v4.1 parser for Python.

Last Updated

Jul 28, 2018 at 07:04

License

BSD-3-Clause

Total Downloads

340.4K

Supported Platforms

linux-ppc64le
linux-64
linux-aarch64
win-64
macOS-64