pyvcf
A Variant Call Format (VCF) v4.0 and v4.1 parser for Python.
A Variant Call Format (VCF) v4.0 and v4.1 parser for Python.
To install this package, run one of the following:
The intent of this module is to mimic the csv module in the Python stdlib, as opposed to more flexible serialization formats like JSON or YAML. vcf will attempt to parse the content of each record based on the data types specified in the meta-information lines -- specifically the ##INFO and ##FORMAT lines. If these lines are missing or incomplete, it will check against the reserved types mentioned in the spec. Failing that, it will just return strings.
Summary
A Variant Call Format (VCF) v4.0 and v4.1 parser for Python.
Last Updated
Jul 28, 2018 at 07:04
License
BSD-3-Clause
Total Downloads
340.4K
Supported Platforms
GitHub Repository
https://github.com/jamescasbon/PyVCFDocumentation
http://pyvcf.readthedocs.io