pyvcf
A Variant Call Format (VCF) v4.0 and v4.1 parser for Python.
A Variant Call Format (VCF) v4.0 and v4.1 parser for Python.
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The intent of this module is to mimic the csv module in the Python stdlib, as opposed to more flexible serialization formats like JSON or YAML. vcf will attempt to parse the content of each record based on the data types specified in the meta-information lines -- specifically the ##INFO and ##FORMAT lines. If these lines are missing or incomplete, it will check against the reserved types mentioned in the spec. Failing that, it will just return strings.
Summary
A Variant Call Format (VCF) v4.0 and v4.1 parser for Python.
Last Updated
Oct 13, 2020 at 12:15
License
BSD-3-Clause
Total Downloads
14
GitHub Repository
https://github.com/jamescasbon/PyVCFDocumentation
http://pyvcf.readthedocs.io