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bioconda / packages / simka

Simka and simkaMin are de novo comparative metagenomics tools. Simka represents each dataset as a k-mer spectrum and computes several classical ecological distances between them. SimkaMin outputs approximate (but very similar) results by subsampling the kmer space and requires much less computational resources.

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Type Size Name Uploaded Downloads Labels
conda 10.4 MB | linux-64/simka-1.5.3-hdcf5f25_4.tar.bz2  1 year and 6 months ago 197 main
conda 8.9 MB | osx-64/simka-1.5.3-hdf58011_4.tar.bz2  1 year and 6 months ago 1080 main
conda 10.4 MB | linux-64/simka-1.5.3-hdcf5f25_3.tar.bz2  1 year and 6 months ago 73 main
conda 10.2 MB | linux-64/simka-1.5.3-hd03093a_3.tar.bz2  1 year and 6 months ago 76 main
conda 9.0 MB | osx-64/simka-1.5.3-h66d0458_3.tar.bz2  1 year and 6 months ago 30 main
conda 8.8 MB | osx-64/simka-1.5.3-h6151dfb_2.tar.bz2  2 years and 9 months ago 41 main
conda 10.1 MB | linux-64/simka-1.5.3-hd03093a_2.tar.bz2  2 years and 9 months ago 192 main
conda 8.6 MB | osx-64/simka-1.5.3-h87af4ef_1.tar.bz2  3 years and 7 months ago 1469 main
conda 10.2 MB | linux-64/simka-1.5.3-h9a82719_1.tar.bz2  3 years and 7 months ago 250 main
conda 8.7 MB | osx-64/simka-1.5.3-h7475705_0.tar.bz2  3 years and 10 months ago 205 main
conda 9.9 MB | linux-64/simka-1.5.3-he513fc3_0.tar.bz2  3 years and 10 months ago 209 main
conda 5.5 MB | osx-64/simka-1.5.2-h2dec4b4_0.tar.bz2  4 years and 8 months ago 3297 main
conda 6.8 MB | linux-64/simka-1.5.2-he513fc3_0.tar.bz2  4 years and 8 months ago 263 main
conda 6.8 MB | linux-64/simka-1.5.1-he513fc3_0.tar.bz2  5 years and 2 months ago 261 main
conda 5.5 MB | osx-64/simka-1.5.1-h2dec4b4_0.tar.bz2  5 years and 2 months ago 3671 main
conda 6.8 MB | linux-64/simka-1.5.0-he513fc3_0.tar.bz2  5 years and 2 months ago 247 main
conda 5.5 MB | osx-64/simka-1.5.0-h2dec4b4_0.tar.bz2  5 years and 2 months ago 3680 main
conda 6.3 MB | linux-64/simka-1.4.0-he941832_0.tar.bz2  6 years and 2 months ago 447 main cf201901
conda 5.6 MB | osx-64/simka-1.4.0-he941832_0.tar.bz2  6 years and 2 months ago 4164 main cf201901
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