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bioconda / packages / simka

Simka and simkaMin are de novo comparative metagenomics tools. Simka represents each dataset as a k-mer spectrum and computes several classical ecological distances between them. SimkaMin outputs approximate (but very similar) results by subsampling the kmer space and requires much less computational resources.

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Type Size Name Uploaded Downloads Labels
conda 10.4 MB | linux-64/simka-1.5.3-h077b44d_5.tar.bz2  1 month and 16 days ago 39 main
conda 10.4 MB | linux-64/simka-1.5.3-hdcf5f25_4.tar.bz2  1 year and 8 months ago 215 main
conda 8.9 MB | osx-64/simka-1.5.3-hdf58011_4.tar.bz2  1 year and 8 months ago 1204 main
conda 10.4 MB | linux-64/simka-1.5.3-hdcf5f25_3.tar.bz2  1 year and 8 months ago 85 main
conda 10.2 MB | linux-64/simka-1.5.3-hd03093a_3.tar.bz2  1 year and 8 months ago 89 main
conda 9.0 MB | osx-64/simka-1.5.3-h66d0458_3.tar.bz2  1 year and 8 months ago 33 main
conda 8.8 MB | osx-64/simka-1.5.3-h6151dfb_2.tar.bz2  2 years and 11 months ago 44 main
conda 10.1 MB | linux-64/simka-1.5.3-hd03093a_2.tar.bz2  2 years and 11 months ago 207 main
conda 8.6 MB | osx-64/simka-1.5.3-h87af4ef_1.tar.bz2  3 years and 10 months ago 1470 main
conda 10.2 MB | linux-64/simka-1.5.3-h9a82719_1.tar.bz2  3 years and 10 months ago 263 main
conda 8.7 MB | osx-64/simka-1.5.3-h7475705_0.tar.bz2  4 years and 17 days ago 210 main
conda 9.9 MB | linux-64/simka-1.5.3-he513fc3_0.tar.bz2  4 years and 17 days ago 223 main
conda 5.5 MB | osx-64/simka-1.5.2-h2dec4b4_0.tar.bz2  4 years and 11 months ago 3419 main
conda 6.8 MB | linux-64/simka-1.5.2-he513fc3_0.tar.bz2  4 years and 11 months ago 276 main
conda 6.8 MB | linux-64/simka-1.5.1-he513fc3_0.tar.bz2  5 years and 4 months ago 272 main
conda 5.5 MB | osx-64/simka-1.5.1-h2dec4b4_0.tar.bz2  5 years and 4 months ago 3797 main
conda 6.8 MB | linux-64/simka-1.5.0-he513fc3_0.tar.bz2  5 years and 5 months ago 259 main
conda 5.5 MB | osx-64/simka-1.5.0-h2dec4b4_0.tar.bz2  5 years and 5 months ago 3800 main
conda 6.3 MB | linux-64/simka-1.4.0-he941832_0.tar.bz2  6 years and 4 months ago 457 main cf201901
conda 5.6 MB | osx-64/simka-1.4.0-he941832_0.tar.bz2  6 years and 4 months ago 4286 main cf201901
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