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bioconductor-compcoder
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public |
RNAseq data simulation, differential expression analysis and performance comparison of differential expression methods
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2024-12-15 |
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ngsngs
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public |
NGSNGS: Next Generation Simulator for Next Generation Sequencing data
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2024-12-15 |
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crumble
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public |
Controllable lossy compression of BAM/CRAM files
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2024-12-15 |
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vamos
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public |
VNTR annotation using efficient motif selection
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2024-12-15 |
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bioconductor-awfisher
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public |
An R package for fast computing for adaptively weighted fisher's method
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2024-12-15 |
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scallop2
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public |
A reference-based transcript assembler optimized for paired-/multiple-end RNA-seq data.
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2024-12-15 |
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hmnrandomread
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public |
A sequence-read simulator program for NGS
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2024-12-15 |
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bioconductor-proper
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public |
PROspective Power Evaluation for RNAseq
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2024-12-15 |
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r-htscluster
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public |
A Poisson mixture model is implemented to cluster genes from high- throughput transcriptome sequencing (RNA-seq) data. Parameter estimation is performed using either the EM or CEM algorithm, and the slope heuristics are used for model selection (i.e., to choose the number of clusters).
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2024-12-15 |
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bioconductor-ppcseq
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public |
Probabilistic Outlier Identification for RNA Sequencing Generalized Linear Models
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2024-12-15 |
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mykrobe
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public |
Antibiotic resistance prediction in minutes
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2024-12-15 |
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pbwt
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public |
Positional Burrows-Wheeler Transform - methods for storing and computing on genome variation data sets
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2024-12-15 |
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bioconductor-rvisdiff
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public |
Interactive Graphs for Differential Expression
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2024-12-15 |
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pfp
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public |
Prefix Free Parsing.
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2024-12-15 |
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bioconductor-anvilaz
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public |
R / Bioconductor Support for the AnVIL Azure Platform
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2024-12-15 |
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lra
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public |
Long read aligner for sequences and contigs
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2024-12-15 |
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repdenovo
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public |
REPdenovo is designed for constructing repeats directly from sequence reads.
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2024-12-15 |
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bioconductor-anvil
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public |
Bioconductor on the AnVIL compute environment
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2024-12-15 |
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rcorrector
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public |
Rcorrector (RNA-seq error CORRECTOR) is a kmer-based error correction method for RNA-seq data. Rcorrector can also be applied to other type of sequencing data where the read coverage is non-uniform, such as single-cell sequencing.
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2024-12-15 |
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bioconductor-anvilgcp
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public |
The GCP R Client for the AnVIL
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2024-12-15 |
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livekraken
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public |
LiveKraken is a real-time metagenomic classifier for Illumina sequencing data.
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2024-12-15 |
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bioconductor-basilisk.utils
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public |
Basilisk Installation Utilities
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2024-12-15 |
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howdesbt
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public |
Sequence Bloom Tree, supporting determined/how split filters
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2024-12-15 |
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leviathan
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public |
Linked-reads based structural variant caller with barcode indexing
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2024-12-15 |
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r-virfinder
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public |
VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data.
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2024-12-15 |
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kraken
|
public |
Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies.
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2024-12-15 |
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r-nbpseq
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public |
Negative Binomial (NB) models for two-group comparisons and regression inferences from RNA-Sequencing Data.
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2024-12-15 |
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bioconductor-metapone
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public |
Conducts pathway test of metabolomics data using a weighted permutation test
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2024-12-15 |
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bioconductor-degseq
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public |
Identify Differentially Expressed Genes from RNA-seq data
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2024-12-15 |
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bioconductor-fobitools
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public |
Tools for Manipulating the FOBI Ontology
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2024-12-15 |
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snk
|
public |
A Snakemake CLI and Workflow Management System.
|
2024-12-15 |
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xatlas
|
public |
xAtlas is a fast and retrainable small variant caller that has been developed at the Baylor College of Medicine Human Genome Sequencing Center.
|
2024-12-15 |
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bioconductor-rdisop
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public |
Decomposition of Isotopic Patterns
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2024-12-15 |
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bioconductor-projectr
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public |
Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering
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2024-12-15 |
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bioconductor-alpsnmr
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public |
Automated spectraL Processing System for NMR
|
2024-12-15 |
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r-viscorvar
|
public |
Overlaying of Correlation Circles and Network of Correlated Variables
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2024-12-15 |
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bioconductor-retrofit
|
public |
RETROFIT: Reference-free deconvolution of cell mixtures in spatial transcriptomics
|
2024-12-15 |
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bioconductor-timeomics
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public |
Time-Course Multi-Omics data integration
|
2024-12-15 |
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bioconductor-metapod
|
public |
Meta-Analyses on P-Values of Differential Analyses
|
2024-12-15 |
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primer3
|
public |
Design PCR primers from DNA sequence. From mispriming libraries to sequence quality data to the generation of internal oligos, primer3 does it.
|
2024-12-15 |
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rapidshapes
|
public |
RapidShapes computes a thermodynamic matcher (TDM), using a runtime heuristic for probabilistic shape analysis.
|
2024-12-15 |
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bioconductor-lea
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public |
LEA: an R package for Landscape and Ecological Association Studies
|
2024-12-15 |
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phcue-ck
|
public |
phcue-ck (pronounced "F-Q-Seek") is a simple tool to get FTP urls for FASTQ files on ENA.
|
2024-12-15 |
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palikiss
|
public |
pAliKiss predicts RNA secondary structures for fixed RNA multiple sequence alignments, with special attention for pseudoknotted structures.
|
2024-12-15 |
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fastqc-rs
|
public |
A fast quality control tool for FASTQ files written in rust.
|
2024-12-15 |
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gopeaks
|
public |
Peak caller for CUT&TAG data
|
2024-12-15 |
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bioconductor-targetsearch
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public |
A package for the analysis of GC-MS metabolite profiling data
|
2024-12-15 |
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mupbwt
|
public |
A light pbwt-based index
|
2024-12-15 |
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bioconductor-treeandleaf
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public |
Displaying binary trees with focus on dendrogram leaves
|
2024-12-15 |
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fastqtk
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public |
fastqtk is a fast and lightweight tool for interleaving/deinterleaving/counting/trimming FASTQ files.
|
2024-12-15 |
