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razers3
|
public |
RazerS 3 - Faster, fully sensitive read mapping
|
2025-08-05 |
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rseg
|
public |
The RSEG software package is used to analyze ChIP-Seq data, especially for identifying genomic regions and their boundaries marked by diffusive histone modification markers, such as H3K36me3 and H3K27me3.
|
2025-08-05 |
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fastani
|
public |
FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI).
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2025-08-05 |
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mash
|
public |
Fast sequence distance estimator that uses MinHash
|
2025-08-05 |
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sincei
|
public |
A user-friendly toolkit for QC, counting, clustering and plotting of single-cell (epi)genomics data.
|
2025-08-05 |
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isoquant
|
public |
IsoQuant is a tool for reference-based analysis of long RNA reads, such as gene/transcript quantification and discovery.
|
2025-08-05 |
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esme_pnetcdf_mvapich_4_0
|
public |
PnetCDF - Parallel netCDF
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2025-08-05 |
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esme_netcdf-c_mvapich_4_0
|
public |
NetCDF-C - netCDF interface for C
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2025-08-05 |
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esme_mvapich_4_0
|
public |
Earth System Modelling Environment (ESME) - A bundle for scientific computing packages for climate modelling with MPI support.
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2025-08-05 |
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esme_pio_mvapich_4_0
|
public |
ParallelIO - High-level parallel I/O library
|
2025-08-05 |
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esme_esmf_mvapich_4_0
|
public |
ESMF - Earth System Modeling Framework
|
2025-08-05 |
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esme_netcdf-fortran_mvapich_4_0
|
public |
NetCDF-Fortran - netCDF interface for Fortran
|
2025-08-05 |
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esme_hdf5_mvapich_4_0
|
public |
HDF5 - Hierarchical Data Format 5
|
2025-08-05 |
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nextclade
|
public |
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement.
|
2025-08-05 |
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dapcy
|
public |
An sklearn implementation of discriminant analysis of principal components (DAPC) for population genetics.
|
2025-08-05 |
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mason
|
public |
Mason is a collection of tools for the simulation of biological sequences.
|
2025-08-05 |
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yara
|
public |
Yara is an exact tool for aligning DNA sequencing reads to reference genomes.
|
2025-08-05 |
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galaxyxml
|
public |
Galaxy XML generation library
|
2025-08-05 |
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dinopy
|
public |
DNA input and output library for Python and Cython. Includes reader and writer for FASTA and FASTQ files, support for samtools faidx files, and generators for solid and gapped q-grams (k-mers).
|
2025-08-05 |
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libmems
|
public |
libMems is a freely available software development library to support DNA string matching and comparative genomics.
|
2025-08-05 |
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bedops
|
public |
High-performance genomic feature operations.
|
2025-08-05 |
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libmuscle
|
public |
libMuscle header files.
|
2025-08-05 |
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pplacer
|
public |
Pplacer places query sequences on a fixed reference phylogenetic tree to maximize phylogenetic likelihood or posterior probability according to a reference alignment.
|
2025-08-05 |
|
libgenome
|
public |
A C++ development library designed to make common operations on DNA and protein sequences easy. libGenome provides functionality to read, write, and manipulate sequence and annotation data in several file formats.
|
2025-08-05 |
|
strawc
|
public |
Straw bound with pybind11
|
2025-08-04 |
