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sequip
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public |
Perl module for biological sequence analysis and supporting utilities..
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2025-09-02 |
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markov_genome
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public |
A Rust package for Markov chain sequence simulation.
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2025-09-02 |
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versionix
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public |
Get version of any tools.
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2025-09-02 |
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varlociraptor
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public |
Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.
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2025-09-02 |
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nbitk
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public |
nbitk: Naturalis BioInformatics ToolKit
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2025-09-02 |
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seqspec
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public |
File format that describes data generated from genomics experiments. File format and seqspec tool enable uniform processing of genomics data.
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2025-09-02 |
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centrifuger
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public |
Lossless compression of microbial genomes for efficient and accurate metagenomic sequence classification.
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2025-09-02 |
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sshash
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public |
SSHash is a compressed dictionary data structure for k-mers (strings of length k over the DNA alphabet {A,C,G,T}), based on Sparse and Skew Hashing.
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2025-09-02 |
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r-shinyngs
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public |
Provides Shiny applications for various array and NGS applications. Currently very RNA-seq centric, with plans for expansion.
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2025-09-02 |
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rgi
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public |
This tool provides a preliminary annotation of your DNA sequence(s) based upon the data available in The Comprehensive Antibiotic Resistance Database (CARD). Hits to genes tagged with Antibiotic Resistance ontology terms will be highlighted. As CARD expands to include more pathogens, genomes, plasmids, and ontology terms this tool will grow increasingly powerful in providing first-pass detection of antibiotic resistance associated genes. See license at CARD website.
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2025-09-01 |
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vcfanno
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public |
Annotate a VCF with other VCFs/BEDs/tabixed files.
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2025-09-01 |
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chromap
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public |
Fast alignment and preprocessing of chromatin profiles
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2025-08-31 |
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perl-parallel-forkmanager
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public |
A simple parallel processing fork manager
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2025-08-30 |
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seqsizzle
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public |
A pager for viewing FASTQ files with fuzzy adaptor matching and coloring.
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2025-08-30 |
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perl-sys-info-driver-linux
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public |
Linux driver for Sys::Info
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2025-08-30 |
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circtools
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public |
circtools - a circular RNA toolbox.
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2025-08-30 |
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mach2
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public |
Migration Analysis of Clonal Histories 2
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2025-08-30 |
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perl-net-http
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public |
Low-level HTTP connection (client).
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2025-08-30 |
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harpy
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public |
Process raw haplotagging data, from raw sequences to phased haplotypes.
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2025-08-30 |
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netmd
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public |
NetMD is a computational method for identifying consensus behavior across multiple molecular dynamics simulations.
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2025-08-30 |
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samrefiner
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public |
A program for gathering variant information from a SAM formated files.
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2025-08-30 |
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mitorsaw
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public |
A tool for mitochondrial analysis for HiFi sequencing data
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2025-08-29 |
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bakta
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public |
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids.
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2025-08-29 |
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swarm
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public |
A robust and fast clustering method for amplicon-based studies.
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2025-08-28 |
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mreps
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public |
mreps is a flexible and efficient software for identifying serial repeats (usually called tandem repeats) in DNA sequences.
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2025-08-28 |
