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galaxy-ml
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public |
APIs for Galaxy machine learning tools
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2024-12-15 |
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perl-set-intervaltree
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public |
An interval tree implementation in PERL.
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2024-12-15 |
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bioconductor-tanggle
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public |
Visualization of Phylogenetic Networks
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2024-12-15 |
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bioconductor-ggtreedendro
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public |
Drawing 'dendrogram' using 'ggtree'
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2024-12-15 |
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coinfinder
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public |
A tool for the identification of coincident (associating and dissociating) genes in pangenomes.
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2024-12-15 |
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bioconductor-ggtreeextra
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public |
An R Package To Add Geometric Layers On Circular Or Other Layout Tree Of "ggtree"
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2024-12-15 |
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bioconductor-philr
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public |
Phylogenetic partitioning based ILR transform for metagenomics data
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2024-12-15 |
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r-fastbaps
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public |
A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data
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2024-12-15 |
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bioconductor-sitepath
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public |
Phylogeny-based sequence clustering with site polymorphism
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2024-12-15 |
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bioconductor-clstutils
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public |
Tools for performing taxonomic assignment
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2024-12-15 |
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rnabridge-align
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public |
A tool to construct the alignments of entire fragments given the alignments of paired-end reads.
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2024-12-15 |
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bcftools
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public |
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed. Most commands accept VCF, bgzipped VCF and BCF with filetype detected automatically even when streaming from a pipe. Indexed VCF and BCF will work in all situations. Un-indexed VCF and BCF and streams will work in most, but not all situations.
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2024-12-15 |
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expansionhunterdenovo
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public |
ExpansionHunter Denovo (EHdn) is a suite of tools for detecting novel expansions of short tandem repeats (STRs).
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2024-12-15 |
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lumpy-sv-minimal
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public |
A general probabilistic framework for structural variant discovery. This package contains only the lumpy executable
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2024-12-15 |
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segemehl
|
public |
Short read mapping with gaps
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2024-12-15 |
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micall-lite
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public |
A bioinformatic pipeline for mapping of FASTQ data to a set of reference
sequences to generate consensus sequences, variant calls and coverage maps.
|
2024-12-15 |
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breseq
|
public |
A computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data.
|
2024-12-15 |
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pyfamsa
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public |
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
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2024-12-15 |
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coverm
|
public |
CoverM aims to be a configurable, easy to use and fast DNA read coverage and relative abundance calculator focused on metagenomics applications
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2024-12-15 |
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novobreak
|
public |
local assembly for breakpoint detection in cancer genomes
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2024-12-15 |
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nanopolish
|
public |
Signal-level algorithms for MinION data.
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2024-12-15 |
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gap2seq
|
public |
Gap2Seq is a tool for filling gaps between contigs in genome assemblies.
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2024-12-15 |
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intarna
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public |
Efficient RNA-RNA interaction prediction incorporating seeding and accessibility of interacting sites
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2024-12-15 |
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bpp-seq
|
public |
Bio++ is a set of C++ libraries for Bioinformatics.
|
2024-12-15 |
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bioconductor-deeppincs
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public |
Protein Interactions and Networks with Compounds based on Sequences using Deep Learning
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2024-12-15 |
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metabat2
|
public |
Metagenome binning
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2024-12-15 |
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r-syntactic
|
public |
Make syntactically valid names out of character vectors.
|
2024-12-15 |
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longreadsum
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public |
Long read sequencing data quality control tool
|
2024-12-15 |
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r-acidmarkdown
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public |
Toolkit for extending the functionality of R Markdown.
|
2024-12-15 |
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rpbp
|
public |
Ribosome profiling with Bayesian predictions (Rp-Bp)
|
2024-12-15 |
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deepchopper
|
public |
A Genomic Language Model for Chimera Artifact Detection in Nanopore Direct RNA Sequencing.
|
2024-12-15 |
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bioconductor-rebet
|
public |
The subREgion-based BurdEn Test (REBET)
|
2024-12-15 |
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parallel-meta-suite
|
public |
Parallel-META-Suite is an interactive software package for rapid and comprehensive microbiome analysis.
|
2024-12-15 |
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oatk
|
public |
Oatk: an organelle genome assembly toolkit
|
2024-12-15 |
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sfld
|
public |
SFLD pre/post-processing
|
2024-12-15 |
|
galah
|
public |
Galah aims to be a more scalable metagenome assembled genome (MAG) dereplication method.
|
2024-12-15 |
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abismal
|
public |
abismal is a fast and memory-efficient mapper for short bisulfite sequencing reads.
|
2024-12-15 |
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perl-dbd-mysql
|
public |
A MySQL driver for the Perl5 Database Interface (DBI)
|
2024-12-15 |
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perl-class-xsaccessor
|
public |
Generate fast XS accessors without runtime compilation
|
2024-12-15 |
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glimpse-bio
|
public |
GLIMPSE is a phasing and imputation method for large-scale low-coverage sequencing studies.
|
2024-12-15 |
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fqtools
|
public |
An efficient FASTQ manipulation suite.
|
2024-12-15 |
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nim-falcon
|
public |
Nim-based executables used by Falcon assembly workflow
|
2024-12-15 |
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longgf
|
public |
A fast tool to detect gene fusion from long-read RNA-seq data.
|
2024-12-15 |
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verifybamid2
|
public |
A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
|
2024-12-15 |
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bioconductor-olingui
|
public |
Graphical user interface for OLIN
|
2024-12-15 |
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bioconductor-msstatsbig
|
public |
MSstats Preprocessing for Larger than Memory Data
|
2024-12-15 |
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bioconductor-simd
|
public |
Statistical Inferences with MeDIP-seq Data (SIMD) to infer the methylation level for each CpG site
|
2024-12-15 |
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scallop-lr
|
public |
Scallop-LR is a reference-based transcriptome assembler for long-reads RNA-seq data
|
2024-12-15 |
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perl-pod-elemental
|
public |
work with nestable Pod elements
|
2024-12-15 |
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metadmg
|
public |
metaDMG-cpp: fast and efficient method for estimating mutation and damage rates in ancient DNA data
|
2024-12-15 |
