bioconda / packages / bioconductor-simd 1.12.0

Statistical Inferences with MeDIP-seq Data (SIMD) to infer the methylation level for each CpG site

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.12.0
  • osx-64  v1.12.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-simd
conda install -c bioconda/label/gcc7 bioconductor-simd

Description

This package provides a inferential analysis method for detecting differentially expressed CpG sites in MeDIP-seq data. It uses statistical framework and EM algorithm, to identify differentially expressed CpG sites. The methods on this package are described in the article 'Methylation-level Inferences and Detection of Differential Methylation with Medip-seq Data' by Yan Zhou, Jiadi Zhu, Mingtao Zhao, Baoxue Zhang, Chunfu Jiang and Xiyan Yang (2018, pending publication).


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