| Package Name | Access | Summary | Updated |
|---|---|---|---|
| nwkit | public | Tools for processing newick trees | 2025-05-13 |
| iow | public | Implementation of Balanced Parentheses | 2025-05-13 |
| isotools | public | Framework for the analysis of long read transcriptome sequencing data. | 2025-05-12 |
| svdss | public | Structural Variant Discovery from Sample-specific Strings. | 2025-05-12 |
| singlem | public | At heart, SingleM is a tool for profiling shotgun metagenomes. It was originally designed to determine the relative abundance of bacterial and archaeal taxa in a sample. As of version 0.19.0, it can also be used to profile dsDNA phages (see Lyrebird). It shows good accuracy in estimating the relative abundances of community members, and has a particular strength in dealing with novel lineages. The method it uses also makes it suitable for some related tasks, such as assessing eukaryotic contamination, finding bias in genome recovery, and lineage-targeted MAG recovery. It can also be used as the basis for choosing metagenomes which, when coassembled, maximise the recovery of novel MAGs (see Bin Chicken). | 2025-05-12 |
| r-viber | public | Variational Binomial Mixtures. | 2025-05-12 |
| genedom | public | Genetic part standardization. | 2025-05-12 |
| cpat | public | Coding Potential Assessment Tool | 2025-05-12 |
| kanpig | public | A fast tool for genotyping structural variants with long-reads. | 2025-05-12 |
| ncbi-amrfinderplus | public | AMRFinderPlus finds antimicrobial resistance and other genes in protein or nucleotide sequences. | 2025-05-12 |
| ectyper | public | ECtyper is a python program for serotyping E. coli genomes | 2025-05-12 |
| cutesv-ol | public | cuteSV-OL: real-time structural variation detection for nanopore sequencing | 2025-05-12 |
| perl-tree-dag_node | public | An N-ary tree. | 2025-05-12 |
| dnacauldron | public | Cloning simulation for DNA assembly (Golden Gate, Gibson...). | 2025-05-12 |
| mimseq | public | Modification-induced misincorporation tRNA sequencing. | 2025-05-12 |
| libcarna | public | Real-time 3D visualization of biomedical data and beyond | 2025-05-12 |
| snapgene-reader | public | Convert Snapgene *.dna files dict/json/biopython. | 2025-05-10 |
| instrain | public | Calculation of strain-level metrics. | 2025-05-10 |
| dnachisel | public | Optimize DNA sequences under constraints. | 2025-05-10 |
| sequenticon | public | Generate human-friendly icons from DNA sequences. | 2025-05-10 |
| parasail | public | Pairwise Sequence Alignment Library | 2025-05-10 |
| methyldackel | public | A (mostly) universal methylation extractor for BS-seq experiments. Formerly named PileOMeth. | 2025-05-09 |
| igua | public | Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification. | 2025-05-09 |
| gfastats | public | The swiss army knife for genome assembly | 2025-05-09 |
| mysterymaster | public | Graphical Oxford Nanopore read demultiplexer | 2025-05-09 |
