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breseq
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public |
A computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data.
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2024-12-15 |
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pyfamsa
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public |
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
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2024-12-15 |
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coverm
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public |
CoverM aims to be a configurable, easy to use and fast DNA read coverage and relative abundance calculator focused on metagenomics applications
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2024-12-15 |
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novobreak
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public |
local assembly for breakpoint detection in cancer genomes
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2024-12-15 |
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nanopolish
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public |
Signal-level algorithms for MinION data.
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2024-12-15 |
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gap2seq
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public |
Gap2Seq is a tool for filling gaps between contigs in genome assemblies.
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2024-12-15 |
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intarna
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public |
Efficient RNA-RNA interaction prediction incorporating seeding and accessibility of interacting sites
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2024-12-15 |
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bpp-seq
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public |
Bio++ is a set of C++ libraries for Bioinformatics.
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2024-12-15 |
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bioconductor-deeppincs
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public |
Protein Interactions and Networks with Compounds based on Sequences using Deep Learning
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2024-12-15 |
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metabat2
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public |
Metagenome binning
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2024-12-15 |
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r-syntactic
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public |
Make syntactically valid names out of character vectors.
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2024-12-15 |
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longreadsum
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public |
Long read sequencing data quality control tool
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2024-12-15 |
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r-acidmarkdown
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public |
Toolkit for extending the functionality of R Markdown.
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2024-12-15 |
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rpbp
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public |
Ribosome profiling with Bayesian predictions (Rp-Bp)
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2024-12-15 |
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deepchopper
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public |
A Genomic Language Model for Chimera Artifact Detection in Nanopore Direct RNA Sequencing.
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2024-12-15 |
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bioconductor-rebet
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public |
The subREgion-based BurdEn Test (REBET)
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2024-12-15 |
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parallel-meta-suite
|
public |
Parallel-META-Suite is an interactive software package for rapid and comprehensive microbiome analysis.
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2024-12-15 |
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oatk
|
public |
Oatk: an organelle genome assembly toolkit
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2024-12-15 |
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sfld
|
public |
SFLD pre/post-processing
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2024-12-15 |
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galah
|
public |
Galah aims to be a more scalable metagenome assembled genome (MAG) dereplication method.
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2024-12-15 |
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abismal
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public |
abismal is a fast and memory-efficient mapper for short bisulfite sequencing reads.
|
2024-12-15 |
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perl-dbd-mysql
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public |
A MySQL driver for the Perl5 Database Interface (DBI)
|
2024-12-15 |
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perl-class-xsaccessor
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public |
Generate fast XS accessors without runtime compilation
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2024-12-15 |
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glimpse-bio
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public |
GLIMPSE is a phasing and imputation method for large-scale low-coverage sequencing studies.
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2024-12-15 |
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fqtools
|
public |
An efficient FASTQ manipulation suite.
|
2024-12-15 |
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nim-falcon
|
public |
Nim-based executables used by Falcon assembly workflow
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2024-12-15 |
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longgf
|
public |
A fast tool to detect gene fusion from long-read RNA-seq data.
|
2024-12-15 |
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verifybamid2
|
public |
A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
|
2024-12-15 |
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bioconductor-olingui
|
public |
Graphical user interface for OLIN
|
2024-12-15 |
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bioconductor-msstatsbig
|
public |
MSstats Preprocessing for Larger than Memory Data
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2024-12-15 |
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bioconductor-simd
|
public |
Statistical Inferences with MeDIP-seq Data (SIMD) to infer the methylation level for each CpG site
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2024-12-15 |
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scallop-lr
|
public |
Scallop-LR is a reference-based transcriptome assembler for long-reads RNA-seq data
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2024-12-15 |
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perl-pod-elemental
|
public |
work with nestable Pod elements
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2024-12-15 |
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metadmg
|
public |
metaDMG-cpp: fast and efficient method for estimating mutation and damage rates in ancient DNA data
|
2024-12-15 |
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matam
|
public |
MATAM is a software dedicated to the fast and accurate targeted assembly of short reads.
|
2024-12-15 |
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bioconductor-arrayquality
|
public |
Assessing array quality on spotted arrays
|
2024-12-15 |
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leviosam2
|
public |
Fast and accurate coordinate conversion between assemblies.
|
2024-12-15 |
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snp-pileup
|
public |
Compute SNP pileup at reference positions in one or more input bam files. Output is ready for the R package facets
|
2024-12-15 |
|
bioconductor-nnnorm
|
public |
Spatial and intensity based normalization of cDNA microarray data based on robust neural nets
|
2024-12-15 |
|
gvcf2coverage
|
public |
Coverage extractor from gVCF files.
|
2024-12-15 |
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bioconductor-olin
|
public |
Optimized local intensity-dependent normalisation of two-color microarrays
|
2024-12-15 |
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bioconductor-stepnorm
|
public |
Stepwise normalization functions for cDNA microarrays
|
2024-12-15 |
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scallop
|
public |
Scallop is a reference-based transcriptome assembler for RNA-seq
|
2024-12-15 |
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bioconductor-rbm
|
public |
RBM: a R package for microarray and RNA-Seq data analysis
|
2024-12-15 |
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tracy
|
public |
Basecalling, alignment, assembly and deconvolution of Sanger chromatogram trace files
|
2024-12-15 |
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bioconductor-roseq
|
public |
Modeling expression ranks for noise-tolerant differential expression analysis of scRNA-Seq data
|
2024-12-15 |
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bioconductor-erccdashboard
|
public |
Assess Differential Gene Expression Experiments with ERCC Controls
|
2024-12-15 |
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cnvnator
|
public |
Tool for calling copy number variations.
|
2024-12-15 |
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popdel
|
public |
Fast structural deletion calling on population-scale short read paired-end germline WGS data.
|
2024-12-15 |
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bioconductor-screenr
|
public |
Package to Perform High Throughput Biological Screening
|
2024-12-15 |
