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r-acidmarkdown
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public |
Toolkit for extending the functionality of R Markdown.
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2024-12-15 |
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rpbp
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public |
Ribosome profiling with Bayesian predictions (Rp-Bp)
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2024-12-15 |
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deepchopper
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public |
A Genomic Language Model for Chimera Artifact Detection in Nanopore Direct RNA Sequencing.
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2024-12-15 |
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bioconductor-rebet
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public |
The subREgion-based BurdEn Test (REBET)
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2024-12-15 |
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parallel-meta-suite
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public |
Parallel-META-Suite is an interactive software package for rapid and comprehensive microbiome analysis.
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2024-12-15 |
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oatk
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public |
Oatk: an organelle genome assembly toolkit
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2024-12-15 |
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sfld
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public |
SFLD pre/post-processing
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2024-12-15 |
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galah
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public |
Galah aims to be a more scalable metagenome assembled genome (MAG) dereplication method.
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2024-12-15 |
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abismal
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public |
abismal is a fast and memory-efficient mapper for short bisulfite sequencing reads.
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2024-12-15 |
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perl-dbd-mysql
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public |
A MySQL driver for the Perl5 Database Interface (DBI)
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2024-12-15 |
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perl-class-xsaccessor
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public |
Generate fast XS accessors without runtime compilation
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2024-12-15 |
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glimpse-bio
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public |
GLIMPSE is a phasing and imputation method for large-scale low-coverage sequencing studies.
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2024-12-15 |
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fqtools
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public |
An efficient FASTQ manipulation suite.
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2024-12-15 |
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nim-falcon
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public |
Nim-based executables used by Falcon assembly workflow
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2024-12-15 |
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longgf
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public |
A fast tool to detect gene fusion from long-read RNA-seq data.
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2024-12-15 |
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verifybamid2
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public |
A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
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2024-12-15 |
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bioconductor-olingui
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public |
Graphical user interface for OLIN
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2024-12-15 |
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bioconductor-msstatsbig
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public |
MSstats Preprocessing for Larger than Memory Data
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2024-12-15 |
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bioconductor-simd
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public |
Statistical Inferences with MeDIP-seq Data (SIMD) to infer the methylation level for each CpG site
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2024-12-15 |
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scallop-lr
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public |
Scallop-LR is a reference-based transcriptome assembler for long-reads RNA-seq data
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2024-12-15 |
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perl-pod-elemental
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public |
work with nestable Pod elements
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2024-12-15 |
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metadmg
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public |
metaDMG-cpp: fast and efficient method for estimating mutation and damage rates in ancient DNA data
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2024-12-15 |
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matam
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public |
MATAM is a software dedicated to the fast and accurate targeted assembly of short reads.
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2024-12-15 |
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bioconductor-arrayquality
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public |
Assessing array quality on spotted arrays
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2024-12-15 |
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leviosam2
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public |
Fast and accurate coordinate conversion between assemblies.
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2024-12-15 |
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snp-pileup
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public |
Compute SNP pileup at reference positions in one or more input bam files. Output is ready for the R package facets
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2024-12-15 |
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bioconductor-nnnorm
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public |
Spatial and intensity based normalization of cDNA microarray data based on robust neural nets
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2024-12-15 |
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gvcf2coverage
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public |
Coverage extractor from gVCF files.
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2024-12-15 |
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bioconductor-olin
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public |
Optimized local intensity-dependent normalisation of two-color microarrays
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2024-12-15 |
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bioconductor-stepnorm
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public |
Stepwise normalization functions for cDNA microarrays
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2024-12-15 |
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scallop
|
public |
Scallop is a reference-based transcriptome assembler for RNA-seq
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2024-12-15 |
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bioconductor-rbm
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public |
RBM: a R package for microarray and RNA-Seq data analysis
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2024-12-15 |
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tracy
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public |
Basecalling, alignment, assembly and deconvolution of Sanger chromatogram trace files
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2024-12-15 |
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bioconductor-roseq
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public |
Modeling expression ranks for noise-tolerant differential expression analysis of scRNA-Seq data
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2024-12-15 |
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bioconductor-erccdashboard
|
public |
Assess Differential Gene Expression Experiments with ERCC Controls
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2024-12-15 |
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cnvnator
|
public |
Tool for calling copy number variations.
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2024-12-15 |
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popdel
|
public |
Fast structural deletion calling on population-scale short read paired-end germline WGS data.
|
2024-12-15 |
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bioconductor-screenr
|
public |
Package to Perform High Throughput Biological Screening
|
2024-12-15 |
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bioconductor-compcoder
|
public |
RNAseq data simulation, differential expression analysis and performance comparison of differential expression methods
|
2024-12-15 |
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ngsngs
|
public |
NGSNGS: Next Generation Simulator for Next Generation Sequencing data
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2024-12-15 |
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crumble
|
public |
Controllable lossy compression of BAM/CRAM files
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2024-12-15 |
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vamos
|
public |
VNTR annotation using efficient motif selection
|
2024-12-15 |
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bioconductor-awfisher
|
public |
An R package for fast computing for adaptively weighted fisher's method
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2024-12-15 |
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scallop2
|
public |
A reference-based transcript assembler optimized for paired-/multiple-end RNA-seq data.
|
2024-12-15 |
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hmnrandomread
|
public |
A sequence-read simulator program for NGS
|
2024-12-15 |
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bioconductor-proper
|
public |
PROspective Power Evaluation for RNAseq
|
2024-12-15 |
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r-htscluster
|
public |
A Poisson mixture model is implemented to cluster genes from high- throughput transcriptome sequencing (RNA-seq) data. Parameter estimation is performed using either the EM or CEM algorithm, and the slope heuristics are used for model selection (i.e., to choose the number of clusters).
|
2024-12-15 |
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bioconductor-ppcseq
|
public |
Probabilistic Outlier Identification for RNA Sequencing Generalized Linear Models
|
2024-12-15 |
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mykrobe
|
public |
Antibiotic resistance prediction in minutes
|
2024-12-15 |
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pbwt
|
public |
Positional Burrows-Wheeler Transform - methods for storing and computing on genome variation data sets
|
2024-12-15 |
