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acms
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public |
Ambivalent Covariance Models (aCMs) are our prototypic suggestion to extend CMs with more than one consensus structure.
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2024-12-18 |
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pkiss
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public |
RNA secondary structure prediction including K-type and kissing hairpin- pseudoknots.
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2024-12-18 |
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knotinframe
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public |
Predicts -1 frameshift sites with simple pseudoknots
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2024-12-18 |
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bioconductor-seqtools
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public |
Analysis of nucleotide, sequence and quality content on fastq files
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2024-12-18 |
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minimap2
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public |
A versatile pairwise aligner for genomic and spliced nucleotide sequences.
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2024-12-18 |
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bioconductor-snpstats
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public |
SnpMatrix and XSnpMatrix classes and methods
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2024-12-18 |
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opticlust
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public |
Single cell clustering and recommendations at a glance.
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2024-12-18 |
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lexicmap
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public |
efficient sequence alignment against millions of prokaryotic genomes
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2024-12-18 |
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svseq2
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public |
An improved approach for accurate and efficient calling of structural variations with low-coverage sequence data
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2024-12-18 |
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melon
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public |
Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
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2024-12-18 |
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seqsizzle
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public |
A pager for viewing FASTQ files with fuzzy adaptor matching and coloring.
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2024-12-18 |
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cortexpy
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public |
A Python API for manipulating (Mc)Cortex de novo assembly graph and link data
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2024-12-18 |
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bioconductor-fmcsr
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public |
Mismatch Tolerant Maximum Common Substructure Searching
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2024-12-18 |
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bioconductor-affy
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public |
Methods for Affymetrix Oligonucleotide Arrays
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2024-12-18 |
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r-restfulr
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public |
Models a RESTful service as if it were a nested R list.
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2024-12-18 |
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necat
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public |
Nanopore data assembler
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2024-12-18 |
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medicc2
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public |
Whole-genome doubling-aware copy number phylogenies for cancer evolution
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2024-12-18 |
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bioconductor-mscoreutils
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public |
Core Utils for Mass Spectrometry Data
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2024-12-18 |
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bioconductor-multtest
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public |
Resampling-based multiple hypothesis testing
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2024-12-18 |
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bioconductor-hem
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public |
Heterogeneous error model for identification of differentially expressed genes under multiple conditions
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2024-12-18 |
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bioconductor-mulcom
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public |
Calculates Mulcom test
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2024-12-18 |
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bioconductor-eir
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public |
Accelerated similarity searching of small molecules
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2024-12-18 |
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bioconductor-cancerclass
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public |
Development and validation of diagnostic tests from high-dimensional molecular data
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2024-12-18 |
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bioconductor-discordant
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public |
The Discordant Method: A Novel Approach for Differential Correlation
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2024-12-18 |
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bioconductor-nanostringdiff
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public |
Differential Expression Analysis of NanoString nCounter Data
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2024-12-18 |
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bioconductor-flowcatchr
|
public |
Tools to analyze in vivo microscopy imaging data focused on tracking flowing blood cells
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2024-12-18 |
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bioconductor-yeastexpdata
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public |
Yeast Experimental Data
|
2024-12-18 |
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bioconductor-metabcombiner
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public |
Method for Combining LC-MS Metabolomics Feature Measurements
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2024-12-18 |
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bioconductor-phenstat
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public |
Statistical analysis of phenotypic data
|
2024-12-18 |
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bioconductor-biocio
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public |
Standard Input and Output for Bioconductor Packages
|
2024-12-18 |
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bioconductor-seqc
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public |
RNA-seq data generated from SEQC (MAQC-III) study
|
2024-12-18 |
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bioconductor-prodata
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public |
SELDI-TOF data of Breast cancer samples
|
2024-12-18 |
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bioconductor-hopach
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public |
Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH)
|
2024-12-18 |
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bioconductor-snagee
|
public |
Signal-to-Noise applied to Gene Expression Experiments
|
2024-12-18 |
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bioconductor-rcellminerdata
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public |
rcellminerData: Molecular Profiles and Drug Response for the NCI-60 Cell Lines
|
2024-12-18 |
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bioconductor-colonca
|
public |
exprSet for Alon et al. (1999) colon cancer data
|
2024-12-18 |
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r-codedepends
|
public |
Tools for analyzing R expressions or blocks of code and determining the dependencies between them. It focuses on R scripts, but can be used on the bodies of functions. There are many facilities including the ability to summarize or get a high-level view of code, determining dependencies between variables, code improvement suggestions.
|
2024-12-18 |
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bioconductor-mfa
|
public |
Bayesian hierarchical mixture of factor analyzers for modelling genomic bifurcations
|
2024-12-18 |
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bioconductor-curatedovariandata
|
public |
Clinically Annotated Data for the Ovarian Cancer Transcriptome
|
2024-12-18 |
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bioconductor-bioassayr
|
public |
Cross-target analysis of small molecule bioactivity
|
2024-12-18 |
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bioconductor-dlbcl
|
public |
Diffuse large B-cell lymphoma expression data
|
2024-12-18 |
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bioconductor-qcmetrics
|
public |
A Framework for Quality Control
|
2024-12-18 |
|
bioconductor-lmdme
|
public |
Linear Model decomposition for Designed Multivariate Experiments
|
2024-12-18 |
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bioconductor-multiscan
|
public |
R package for combining multiple scans
|
2024-12-18 |
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bioconductor-golubesets
|
public |
exprSets for golub leukemia data
|
2024-12-18 |
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bioconductor-hmdbquery
|
public |
utilities for exploration of human metabolome database
|
2024-12-18 |
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bioconductor-crcl18
|
public |
CRC cell line dataset
|
2024-12-18 |
|
bioconductor-prostatecancerstockholm
|
public |
Prostate Cancer Data
|
2024-12-18 |
|
bioconductor-ccl4
|
public |
Carbon Tetrachloride (CCl4) treated hepatocytes
|
2024-12-18 |
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bioconductor-cellmapper
|
public |
Predict genes expressed selectively in specific cell types
|
2024-12-18 |
