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gofasta
|
public |
Genomic epidemiology utilities for short genome alignments
|
2025-02-12 |
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hmmer2
|
public |
No Summary
|
2025-02-12 |
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pullseq
|
public |
No Summary
|
2025-02-12 |
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reseek
|
public |
Protein structure alignment and search algorithm.
|
2025-02-12 |
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snakemake
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2025-02-12 |
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snakemake-minimal
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2025-02-12 |
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regtools
|
public |
Tools that integrate DNA-seq and RNA-seq data to help interpret mutations in a regulatory and splicing context.
|
2025-02-12 |
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capcruncher
|
public |
An end-to-end solution for processing Capture-C, Tri-C and Tiled-C data.
|
2025-02-12 |
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ms2deepscore
|
public |
Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity
|
2025-02-12 |
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nanoq
|
public |
Ultra-fast quality control and summary reports for nanopore reads
|
2025-02-12 |
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rhocall
|
public |
Call regions of homozygosity and make tentative UPD calls.
|
2025-02-12 |
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prinseq-plus-plus
|
public |
PRINSEQ++ - Multi-threaded C++ sequence cleaning
|
2025-02-12 |
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glnexus
|
public |
scalable gVCF merging and joint variant calling for population sequencing projects.
|
2025-02-12 |
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cooltools
|
public |
Analysis tools for genomic interaction data stored in .cool format
|
2025-02-12 |
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cnvnator
|
public |
Tool for calling copy number variations.
|
2025-02-12 |
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r-scevan
|
public |
Single CEll Variational Aneuploidy aNalysis
|
2025-02-12 |
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sphae
|
public |
Phage toolkit
|
2025-02-12 |
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relion
|
public |
Image-processing software for cryo-electron microscopy.
|
2025-02-12 |
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pegasuspy
|
public |
An efficient Python analysis tool which scales to transcriptomes of millions of single cells.
|
2025-02-12 |
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star
|
public |
An RNA-seq read aligner.
|
2025-02-12 |
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radiantkit
|
public |
Radiantkit is a Python package containing tools for full-stack image analysis YFISH images.
|
2025-02-12 |
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quicktree
|
public |
Fast implementation of the neighbour-joining phylogenetic inference method
|
2025-02-12 |
|
fibertools-rs
|
public |
Mitchell Vollger's rust tools for fiberseq data.
|
2025-02-12 |
|
bakta
|
public |
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids.
|
2025-02-12 |
|
iqtree
|
public |
Efficient phylogenomic software by maximum likelihood.
|
2025-02-12 |
|
moments
|
public |
Evolutionary inference using SFS and LD statistics.
|
2025-02-12 |
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sigprofilerplotting
|
public |
SigProfiler plotting tool.
|
2025-02-11 |
|
sniffles
|
public |
Sniffles is a structural variation caller using third generation sequencing (PacBio or Oxford Nanopore).
|
2025-02-11 |
|
esme_openmpi_4_1_6
|
public |
Earth System Modelling Environment (ESME) - A bundle for scientific computing packages for climate modelling with MPI support.
|
2025-02-11 |
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esme_pnetcdf_openmpi_4_1_6
|
public |
PnetCDF - Parallel netCDF
|
2025-02-11 |
|
esme_netcdf-fortran_openmpi_4_1_6
|
public |
NetCDF-Fortran - netCDF interface for Fortran
|
2025-02-11 |
|
esme_esmf_openmpi_4_1_6
|
public |
ESMF - Earth System Modeling Framework
|
2025-02-11 |
|
esme_hdf5_openmpi_4_1_6
|
public |
HDF5 - Hierarchical Data Format 5
|
2025-02-11 |
|
esme_omb_openmpi_4_1_6
|
public |
OSU Micro Benchmarks
|
2025-02-11 |
|
esme_pio_openmpi_4_1_6
|
public |
ParallelIO - High-level parallel I/O library
|
2025-02-11 |
|
esme_netcdf-c_openmpi_4_1_6
|
public |
NetCDF-C - netCDF interface for C
|
2025-02-11 |
|
kakscalculator2
|
public |
KaKs_Calculator2.0 calculates Ka and Ks.
|
2025-02-11 |
|
r-crbhits
|
public |
CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R.
|
2025-02-11 |
|
dagchainer
|
public |
DAGchainer identifies syntenic regions.
|
2025-02-11 |
|
bioconductor-msa2dist
|
public |
MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis
|
2025-02-11 |
|
mashtree
|
public |
Create a tree using Mash distances
|
2025-02-11 |
|
perl-aceperl
|
public |
Object-Oriented Access to ACEDB Databases
|
2025-02-11 |
|
rust-gtars
|
public |
Performance-critical tools to manipulate, analyze, and process genomic interval data.
|
2025-02-11 |
|
esme_pnetcdf_mpich_4_2_3
|
public |
PnetCDF - Parallel netCDF
|
2025-02-11 |
|
esme_esmf_mpich_4_2_3
|
public |
ESMF - Earth System Modeling Framework
|
2025-02-11 |
|
esme_omb_mpich_4_2_3
|
public |
OSU Micro Benchmarks
|
2025-02-11 |
|
esme_mpich_4_2_3
|
public |
Earth System Modelling Environment (ESME) - A bundle for scientific computing packages for climate modelling with MPI support.
|
2025-02-11 |
|
esme_hdf5_mpich_4_2_3
|
public |
HDF5 - Hierarchical Data Format 5
|
2025-02-11 |
|
esme_pio_mpich_4_2_3
|
public |
ParallelIO - High-level parallel I/O library
|
2025-02-11 |
|
esme_netcdf-fortran_mpich_4_2_3
|
public |
NetCDF-Fortran - netCDF interface for Fortran
|
2025-02-11 |
