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pybiolib
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public |
BioLib Python Client
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2024-11-26 |
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fastani
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public |
FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI).
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2024-11-26 |
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metabolights-utils
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public |
MetaboLights open metabolomics data repository command line interface (CLI), common MetaboLights data models, utility methods and classes.
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2024-11-26 |
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harpy
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public |
Process raw haplotagging data, from raw sequences to phased haplotypes.
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2024-11-26 |
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influx_si
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public |
Metabolic flux and concentration estimation based on stable isotope labeling
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2024-11-26 |
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gretl
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public |
gretl is a tool to compute a range of statistics on variation graphs in gfa format.
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2024-11-26 |
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edta
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public |
Extensive de-novo TE Annotator
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2024-11-26 |
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perl-string-diff
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public |
Simple diff to String
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2024-11-26 |
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dnachisel
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public |
Optimize DNA sequences under constraints.
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2024-11-26 |
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arvados-python-client
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public |
Python API for Arvados
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2024-11-26 |
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biobb_mem
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public |
Biobb_mem is the Biobb module for membrane structure analysis.
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2024-11-26 |
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lrge
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public |
Genome size estimation from long read overlaps
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2024-11-26 |
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polap
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public |
POLAP: plant organelle long-read assembly pipeline
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2024-11-26 |
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skani
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public |
skani is a fast and robust tool for calculating ANI between metagenome assembled genomes and contigs.
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2024-11-26 |
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bioconda-repodata-patches
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public |
generate tweaks to index metadata, hosted separately from anaconda.org index
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2024-11-26 |
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genera
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public |
Uncovering gene-family founder events during major evolutionary transitions in animals, plants and fungi using GenEra
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2024-11-25 |
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trgt
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public |
Tandem repeat genotyping and visualization from PacBio HiFi data
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2024-11-25 |
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ucsc-bedtobigbed
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public |
Convert bed file to bigBed. (BigBed version: 4)
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2024-11-25 |
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ensembl-vep
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public |
Ensembl Variant Effect Predictor
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2024-11-25 |
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tipp
|
public |
TIPP: A User-Friendly Tool for De Novo Assembly of Organellar Genomes with HiFi Data
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2024-11-25 |
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ucsc-stringify
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public |
Convert file to C strings.
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2024-11-25 |
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ucsc-fatovcf
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public |
Extract VCF from a multi-sequence FASTA alignment.
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2024-11-25 |
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thapbi-pict
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public |
THAPBI Phytophthora ITS1 Classifier Tool (PICT).
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2024-11-25 |
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pycomo
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public |
PyCoMo is a software package for generating and analysing compartmentalized community metabolic models
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2024-11-25 |
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snp2cell
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public |
A package for finding enriched regulatory networks from GWAS and single cell data.
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2024-11-25 |
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agc
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public |
Assembled Genomes Compressor (AGC) is a tool designed to compress collections of de-novo assembled genomes. It can be used for various types of datasets: short genomes (viruses) as well as long (humans).
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2024-11-25 |
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ngs-bits
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public |
Short-read sequencing tools
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2024-11-25 |
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hyphy
|
public |
An open-source software package for comparative sequence analysis using stochastic evolutionary models.
|
2024-11-25 |
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cobs
|
public |
Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
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2024-11-25 |
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omamer
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public |
OMAmer - tree-driven and alignment-free protein assignment to sub-families
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2024-11-25 |
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biobb_vs
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public |
Biobb_vs is the Biobb module collection to perform virtual screening studies.
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2024-11-25 |
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ntsm
|
public |
ntsm - Nucleotide Sequence/Sample Matcher
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2024-11-25 |
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voyager
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public |
Rapid and efficient mapping algorithm for long sequencing reads with insertion- and deletion errors.
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2024-11-25 |
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star
|
public |
An RNA-seq read aligner.
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2024-11-25 |
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damidseq_pipeline
|
public |
An automated pipeline for processing DamID sequencing datasets.
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2024-11-25 |
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vgorient
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public |
Scripts for processing mitochondrial graphs.
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2024-11-25 |
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hmftools-sage
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public |
SAGE is a somatic SNV, MNV and small INDEL caller optimised 100x tumor / 40x normal coverage, but has a flexible set of filters that can be adapted to lower or higher depth coverage.
|
2024-11-25 |
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hmftools-sigs
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public |
Fits sample SNV counts to trinucleotide signature definitions.
|
2024-11-25 |
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hmftools-virus-interpreter
|
public |
Post-process VIRUSBreakend summary results.
|
2024-11-25 |
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hmftools-purple
|
public |
PURPLE is a purity ploidy estimator for tumor samples.
|
2024-11-25 |
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stranger
|
public |
Annotate VCF files with STR variants with pathogenicity implications.
|
2024-11-25 |
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straglr
|
public |
Short-tandem repeat genotyping using long reads
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2024-11-25 |
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gmap
|
public |
Genomic mapping and alignment program for mRNA and EST sequences.
|
2024-11-25 |
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phyclone
|
public |
Accurate Bayesian reconstruction of cancer phylogenies from bulk sequencing.
|
2024-11-25 |
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absense
|
public |
abSENSE: a method to interpret undetected homologs
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2024-11-25 |
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clinker-py
|
public |
Gene cluster comparison figure generator
|
2024-11-25 |
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ashlar
|
public |
Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
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2024-11-25 |
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wipertools
|
public |
A suite of programs that drop or fix pesky lines in FASTQ files and that split FASTQ files into chunks or merge them.
|
2024-11-25 |
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hifiadapterfilt
|
public |
Convert .bam to .fastq and remove reads with remnant PacBio HiFi adapter sequences
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2024-11-25 |
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dysgu
|
public |
A collection of tools for calling structural variants using short or long reads
|
2024-11-24 |
