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unifrac
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public |
Fast phylogenetic diversity calculations
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2023-06-16 |
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perl-moosex-singleton
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public |
Turn your Moose class into a singleton
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2023-06-16 |
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bioconductor-platecore
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public |
Provides basic S4 data structures and routines for analyzing plate based flow cytometry data.
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2023-06-16 |
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kwip
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public |
kWIP implements a de novo, alignment free measure of sample genetic dissimilarity
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2023-06-16 |
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bioconductor-post
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public |
Projection onto Orthogonal Space Testing for High Dimensional Data
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2023-06-16 |
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bioconductor-sapfinder
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public |
A package for variant peptides detection and visualization in shotgun proteomics.
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2023-06-16 |
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consel
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public |
CONSEL calculates the probability value (i.e., p-value) to assess the confidence in the selection problem. Although CONSEL is applicable to any selection problem, it is mainly designed for the phylogenetic tree selection
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2023-06-16 |
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bioconductor-shinytandem
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public |
Provides a GUI for rTANDEM
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2023-06-16 |
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bioconductor-mitoodedata
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public |
Experimental data associated to the paper "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay"
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2023-06-16 |
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bioconductor-rnaseqrdata
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public |
RNASeqRData: sample data for RNASeqR software package demonstration
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2023-06-16 |
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bioconductor-gaia
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public |
GAIA: An R package for genomic analysis of significant chromosomal aberrations.
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2023-06-16 |
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bioconductor-bioseqclass
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public |
Classification for Biological Sequences
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2023-06-16 |
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r-taxonomizr
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public |
Functions for assigning taxonomy to NCBI accession numbers and taxon IDs based on NCBI's accession2taxid and taxdump files. This package allows the user to downloads NCBI data dumps and create a local database for fast and local taxonomic assignment.
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2023-06-16 |
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bioconductor-mitoode
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public |
Implementation of the differential equation model described in "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay"
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2023-06-16 |
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bioconductor-prize
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public |
Prize: an R package for prioritization estimation based on analytic hierarchy process
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2023-06-16 |
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bioconductor-pcagopromoter.mm.mm9
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public |
pcaGoPromoter.Mm.mm9 is a data package used by pcaGoPromoter
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2023-06-16 |
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bioconductor-flowfit
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public |
Estimate proliferation in cell-tracking dye studies
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2023-06-16 |
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bioconductor-rtandem
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public |
Interfaces the tandem protein identification algorithm in R
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2023-06-16 |
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bioconductor-geecc
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public |
Gene Set Enrichment Analysis Extended to Contingency Cubes
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2023-06-16 |
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bioconductor-clonotyper
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public |
High throughput analysis of T cell antigen receptor sequences
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2023-06-16 |
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bioconductor-coexnet
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public |
coexnet: An R package to build CO-EXpression NETworks from Microarray Data
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2023-06-16 |
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r-clvalid
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public |
Statistical and biological validation of clustering results.
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2023-06-16 |
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fast5-research
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public |
ONT Research fast5 read/write package
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2023-06-16 |
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bioconductor-iontreedata
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public |
Raw MS2, MS3 scans from direct infusion mass spectrometry (DIMS) and a demo ion tree database 'mzDB' derived from the DIMS data are included. The demo database is used to show the functionalities provided by the 'iontree' package, not for the purpose of compound identification by any means.
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2023-06-16 |
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bioconductor-gprege
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public |
Gaussian Process Ranking and Estimation of Gene Expression time-series
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2023-06-16 |
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bioconductor-condcomp
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public |
For a given clustered data, which can also be split into two conditions, this package provides a way to perform a condition comparison on said clustered data. The comparison is performed on each cluster. Several statistics are used and, when analysed in conjunction, they might give some insight regarding the heterogeneity of some of the clusters.
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2023-06-16 |
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changeo
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public |
A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data. Citations: Gupta, et al (2015) <doi:10.1093/bioinformatics/btv359>.
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2023-06-16 |
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bioconductor-gskb
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public |
Gene Set data for pathway analysis in mouse
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2023-06-16 |
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bioconductor-dupchecker
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public |
a package for checking high-throughput genomic data redundancy in meta-analysis
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2023-06-16 |
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bioconductor-cormut
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public |
Detect the correlated mutations based on selection pressure
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2023-06-16 |
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bioconductor-omicsmarker
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public |
Classification and Feature Selection for 'Omics' Datasets
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2023-06-16 |
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bioconductor-ngscopy
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public |
NGScopy provides a quantitative caller for detecting copy number variations in next generation sequencing (NGS), including whole genome sequencing (WGS), whole exome sequencing (WES) and targeted panel sequencing (TPS). The caller can be parallelized by chromosomes to use multiple processors/cores on one computer.
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2023-06-16 |
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bioconductor-gatingmldata
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public |
Data and XML files for Gating-ML Test suite
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2023-06-16 |
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bioconductor-abadata
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public |
Averaged gene expression in human brain regions from Allen Brain Atlas
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2023-06-16 |
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faststructure
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public |
A variational framework for inferring population structure from SNP genotype data.
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2023-06-16 |
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bioconductor-adaptest
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public |
Data-Adaptive Statistics for High-Dimensional Multiple Testing
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2023-06-16 |
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bioconductor-chrogps
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public |
chroGPS2: Generation, visualization and differential analysis of epigenome maps
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2023-06-16 |
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calour
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public |
exploratory and interactive microbiome analyses based on heatmaps
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2023-06-16 |
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bioconductor-wavetilingdata
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public |
waveTiling Example Data
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2023-06-16 |
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bioconductor-pathprintgeodata
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public |
Pathway fingerprint vectors representing a subsection of arrays from the GEO data repository
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2023-06-16 |
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bioconductor-jctseqdata
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public |
Example Junction Count data for use with JunctionSeq
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2023-06-16 |
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bioconductor-gqtlstats
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public |
gQTLstats: computationally efficient analysis for eQTL and allied studies
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2023-06-16 |
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perl-local-lib
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public |
create and use a local lib/ for perl modules with PERL5LIB
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2023-06-16 |
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bioconductor-pcagopromoter.rn.rn4
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public |
pcaGoPromoter.Rn.rn4 is a data package used by pcaGoPromoter
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2023-06-16 |
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r-enrichr
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public |
Provides an R interface to all 'Enrichr' databases, a web-based tool for analysing gene sets and returns any enrichment of common annotated biological functions. <http://amp.pharm.mssm.edu/Enrichr/>.
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2023-06-16 |
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bioconductor-elbow
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public |
ELBOW - Evaluating foLd change By the lOgit Way
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2023-06-16 |
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skmer
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public |
Assembly-free and alignment-free tool for estimating genomic distances between genome-skims
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2023-06-16 |
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bioconductor-pcagopromoter.hs.hg19
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public |
pcaGoPromoter.Hs.hg19 is a data package used by pcaGoPromoter
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2023-06-16 |
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bioconductor-msstatsbiodata
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public |
Datasets of published biological studies with DDA or SRM experiments
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2023-06-16 |
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r-bc3net
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public |
Implementation of the BC3NET algorithm for gene regulatory network inference (de Matos Simoes and Frank Emmert-Streib, Bagging Statistical Network Inference from Large-Scale Gene Expression Data, PLoS ONE 7(3): e33624, <doi:10.1371/journal.pone.0033624>).
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2023-06-16 |
