bioconda / packages / bioconductor-geecc 1.21.0

Gene Set Enrichment Analysis Extended to Contingency Cubes


Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.21.0
  • osx-64  v1.21.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-geecc
conda install -c bioconda/label/gcc7 bioconductor-geecc


Use log-linear models to perform hypergeometric and chi-squared tests for gene set enrichments for two (based on contingency tables) or three categories (contingency cubes). Categories can be differentially expressed genes, GO terms, sequence length, GC content, chromosomal position, phylostrata, divergence-strata, ....

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