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jvarkit-msa2vcf
|
public |
Writes a VCF from a multiple sequence alignment (MSA) in CLUSTAW or a FASTA format
|
2023-06-16 |
|
bioconductor-mlm4omics
|
public |
To conduct Bayesian inference regression for responses with multilevel explanatory variables and missing values; It uses function from 'Stan', a software to implement posterior sampling using Hamiltonian MC and its variation Non-U-Turn algorithms. It implements the posterior sampling of regression coefficients from the multilevel regression models. The package has two main functions to handle not-missing-at-random missing responses and left-censored with not-missing-at random responses. The purpose is to provide a similar format as the other R regression functions but using 'Stan' models.
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2023-06-16 |
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scelvis
|
public |
SCelVis - web-based visualization of single-cell data
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2023-06-16 |
|
clusterpicker
|
public |
The Cluster Picker identifies clusters in newick-formatted trees containing thousands of sequences within a few minutes.
|
2023-06-16 |
|
bioconductor-explorase
|
public |
GUI for exploratory data analysis of systems biology data
|
2023-06-16 |
|
mhcnuggets
|
public |
MHCnuggets: Neoantigen peptide MHC binding prediction for class I and II
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2023-06-16 |
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happer
|
public |
Minimal Python library for generating haplotype sequences.
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2023-06-16 |
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ma
|
public |
MA - The Modular Aligner
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2023-06-16 |
|
perl-cg-pipeline
|
public |
Perl libraries required for CG-Pipeline.
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2023-06-16 |
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perl-lyve-set
|
public |
Perl libraries required for Lyve-SET.
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2023-06-16 |
|
kipoi-utils
|
public |
kipoi-utils: utils used in various packages related to kipoi
|
2023-06-16 |
|
kipoi-conda
|
public |
kipoi-conda: conda/pip related functionality used by Kipoi
|
2023-06-16 |
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sexdeterrmine
|
public |
A python script carry out calculate the relative coverage of X and Y chromosomes, and their associated error bars, out of capture data.
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2023-06-16 |
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capc-map
|
public |
Analysis software for Capture-C data
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2023-06-16 |
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r-kaos
|
public |
Sequences encoding by using the chaos game representation. Löchel et al. (2019) <doi:10.1101/575324>.
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2023-06-16 |
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scvis
|
public |
scvis is a python package for dimension reduction of high-dimensional biological data, especially single-cell RNA-sequencing (scRNA-seq) data.
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2023-06-16 |
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jvarkit-bam2wig
|
public |
Bam to fixedStep Wiggle converter, or BED GRAPH.
|
2023-06-16 |
|
jvarkit-bam2svg
|
public |
BAM to Scalar Vector Graphics (SVG)
|
2023-06-16 |
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magpurify
|
public |
Identify and remove incorrectly binned contigs from metagenome-assembled genomes.
|
2023-06-16 |
|
scaden
|
public |
Cell type deconvolution using single cell data
|
2023-06-16 |
|
deeplift
|
public |
DeepLIFT (Deep Learning Important FeaTures)
|
2023-06-16 |
|
cesm
|
public |
The Community Earth System Model (CESM) is a coupled climate model for simulating Earth’s climate system
|
2023-06-16 |
|
pbgcpp
|
public |
pbgcpp - GenomicConsensus in C++
|
2023-06-16 |
|
pipelign
|
public |
A pipeline for automated multiple sequence alignment, particularly of viral sequences.
|
2023-06-16 |
|
kronos
|
public |
Kronos is a highly flexible Python-based software tool that mainly enables bioinformatics developers, i.e. bioinformaticians who develop workflows for analyzing genomic data, to quickly make a workflow.
|
2023-06-16 |
|
perl-dumbbench
|
public |
More reliable benchmarking with the least amount of thinking
|
2023-06-16 |
|
perl-archive-tar-wrapper
|
public |
API wrapper around the 'tar' utility
|
2023-06-16 |
|
perl-test-lectrotest
|
public |
Easy, automatic, specification-based tests
|
2023-06-16 |
|
amas
|
public |
Calculate various summary statistics on a multiple sequence alignment
|
2023-06-16 |
|
bioconductor-mapkl
|
public |
A Hybrid Feature Selection method for gene expression data
|
2023-06-16 |
|
collect-columns
|
public |
Retrieve a column for each in a set of tables, placing them in a single output table.
|
2023-06-16 |
|
perl-devel-checkos
|
public |
check what OS we're running on
|
2023-06-16 |
|
perl-moosex-object-pluggable
|
public |
Make your classes pluggable
|
2023-06-16 |
|
wgs2ncbi
|
public |
Toolkit for preparing genomes for submission to NCBI
|
2023-06-16 |
|
perl-prefork
|
public |
Optimized module loading for forking or non-forking processes
|
2023-06-16 |
|
deepac
|
public |
Predicting pathogenic potentials of novel DNA with reverse-complement neural networks.
|
2023-06-16 |
|
perl-biosails
|
public |
Standard(ized) Analysis Information Layers
|
2023-06-16 |
|
perl-number-witherror
|
public |
Numbers with error propagation and scientific rounding
|
2023-06-16 |
|
snp-mutator
|
public |
Generate mutated sequence files from a reference genome.
|
2023-06-16 |
|
circos-tools
|
public |
circos-tools provides several utility add-on scripts, such as for bundling links
|
2023-06-16 |
|
braker2
|
public |
BRAKER2 is an extension of BRAKER1
|
2023-06-16 |
|
mtsv
|
public |
MTSv is a suite of metagenomic binning and analysis tools.
|
2023-06-16 |
|
r-genemodel
|
public |
Using simple input, this package creates plots of gene models. Users can create plots of alternatively spliced gene variants and the positions of mutations and other gene features.
|
2023-06-16 |
|
ismapper
|
public |
A mapping-based tool for identification of the site and orientation of IS insertions in bacterial genomes.
|
2023-06-16 |
|
eval
|
public |
Eval is a flexible tool for analyzing the performance of gene-structure prediction programs.
|
2023-06-16 |
|
pybda
|
public |
Big biological data analytics powered by Apache Spark
|
2023-06-16 |
|
perl-logger-simple
|
public |
Implementation of the Simran-Log-Log and Simran-Error-Error modules
|
2023-06-16 |
|
irida-uploader
|
public |
Upload NGS data to IRIDA system
|
2023-06-16 |
|
pepgenome
|
public |
A java tool to map peptide and peptidoform evideces to ENSEMBL Genome Coordinates
|
2023-06-16 |
|
gapfiller
|
public |
GapFiller is a seed-and-extend local assembler to fill the gap within paired reads.
|
2023-06-16 |
