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biobb_common
|
public |
Biobb_common is the base package required to use the biobb packages.
|
2024-10-11 |
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tbtamr
|
public |
A tool implementing TB-Profiler for reporting of genomic DST for M. tuberculosis in a CPHL
|
2024-10-11 |
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earlgrey
|
public |
Earl Grey: A fully automated TE curation and annotation pipeline
|
2024-10-11 |
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ena-webin-cli
|
public |
Data submissions to ENA can be made using the Webin command line submission interface (Webin-CLI).
|
2024-10-11 |
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sizemeup
|
public |
A simple tool to determine the genome size of an organism
|
2024-10-11 |
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vamos
|
public |
VNTR annotation using efficient motif selection
|
2024-10-11 |
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pypints
|
public |
Peak Identifier for Nascent Transcripts Starts (PINTS)
|
2024-10-11 |
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vvv2_display
|
public |
Creates png image file with all [vardict] variants proportions alongside genome/assembly with annotations from [vadr].
|
2024-10-10 |
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pyfaidx
|
public |
pyfaidx: efficient pythonic random access to fasta subsequences
|
2024-10-10 |
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querynator
|
public |
Python package to query cancer variant databases
|
2024-10-10 |
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nanosim
|
public |
NanoSim is a fast and scalable read simulator for Nanopore sequencing data.
|
2024-10-10 |
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pantax
|
public |
Strain-level taxonomic classification of metagenomic data using pangenome graphs
|
2024-10-10 |
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picard
|
public |
Java tools for working with NGS data in the BAM format
|
2024-10-10 |
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picard-slim
|
public |
Java tools for working with NGS data in the BAM format.
|
2024-10-10 |
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kmc
|
public |
Tools for efficient k-mer counting and filtering of reads based on k-mer content.
|
2024-10-09 |
|
sipros
|
public |
Tools for stable isotopic mass spectrometry-based metaproteomics
|
2024-10-09 |
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kmercamel
|
public |
KmerCamel🐫 - compressing k-mer sets using masked superstrings
|
2024-10-09 |
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sequali
|
public |
Fast sequencing quality metrics
|
2024-10-09 |
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orthologer
|
public |
Establish orthology among fasta files.
|
2024-10-09 |
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patchify
|
public |
A library that helps you split image into small, overlappable patches, and merge patches back into the original image.
|
2024-10-09 |
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delly
|
public |
Structural variant discovery by integrated paired-end and split-read analysis
|
2024-10-09 |
|
tefinder
|
public |
Programs for transposable element search and annotation in large eukaryotic genome sequence.
|
2024-10-09 |
|
woltka
|
public |
versatile meta-omic data classifier
|
2024-10-09 |
|
scitrack
|
public |
SciTrack provides basic logging capabilities to track scientific computations.
|
2024-10-08 |
|
get_mnv
|
public |
Tool to identify Multi-Nucleotide Variants (MNVs) in genomic sequences.
|
2024-10-08 |
|
pyhmmer
|
public |
Cython bindings and Python interface to HMMER3.
|
2024-10-08 |
|
pgscatalog.match
|
public |
Tools for matching variants in PGS scoring files and target variant information files.
|
2024-10-08 |
|
snakemake-executor-plugin-kubernetes
|
public |
A snakemake executor plugin for submission of jobs to Kubernetes
|
2024-10-08 |
|
civicpy
|
public |
CIViC variant knowledgebase analysis toolkit.
|
2024-10-08 |
|
pepnovo
|
public |
No Summary
|
2024-10-08 |
|
ngs-tools
|
public |
Reusable tools for working with next-generation sequencing (NGS) data
|
2024-10-08 |
|
mgikit
|
public |
mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.
|
2024-10-08 |
|
viroconstrictor
|
public |
ViroConstrictor is a flexible pipeline for analysis of targeted viral sequencing data
|
2024-10-08 |
|
orthanq
|
public |
Uncertainty aware HLA typing and general haplotype quantification
|
2024-10-08 |
|
phylodm
|
public |
Efficient calculation of phylogenetic distance matrices.
|
2024-10-08 |
|
mutamr
|
public |
Stripped down tool for generation of annotated vcf from paired-end reads in a CPHL.
|
2024-10-08 |
|
breseq
|
public |
A computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data.
|
2024-10-07 |
|
vitap
|
public |
Viral Taxonomic Assignment Pipeline
|
2024-10-07 |
|
r-cobrar
|
public |
COnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R
|
2024-10-07 |
|
pgscatalog.calc
|
public |
Libraries and applications for working with calculated polygenic scores
|
2024-10-07 |
|
vclean
|
public |
vClean: Assessing the contamination of viral genomes
|
2024-10-07 |
|
parebrick
|
public |
A bioinf tool for finding genome rearrangements in bacterial genomes.
|
2024-10-07 |
|
mini3di
|
public |
A NumPy port of the foldseek code for encoding protein structures to 3di.
|
2024-10-07 |
|
heliano
|
public |
HELIANO: A fast and accurate tool for detection of Helitron-like elements
|
2024-10-07 |
|
fastaptamer
|
public |
A Bioinformatic Toolkit for High-Throughput Sequence Analysis of Combinatorial Selections
|
2024-10-07 |
|
pydustmasker
|
public |
Python library for identification and masking of low-complexity regions in nucleotide sequences.
|
2024-10-07 |
|
snakemake-storage-plugin-gcs
|
public |
A Snakemake storage plugin for Google Cloud Storage
|
2024-10-07 |
|
mbgc
|
public |
A tool for compressing collection of genomes in FASTA format
|
2024-10-07 |
|
pyliftover
|
public |
Pure-python implementation of UCSC ``liftOver`` genome coordinate conversion.
|
2024-10-07 |
|
galaxy_sequence_utils
|
public |
Sequence Utilities from the Galaxy project
|
2024-10-07 |
