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monsda
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public |
MONSDA, Modular Organizer of Nextflow and Snakemake driven HTS Data Analysis
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2024-08-08 |
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sonicparanoid
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public |
SonicParanoid: fast, accurate, and comprehensive orthology inference with machine learning and language models
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2024-08-07 |
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hybkit
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public |
Hybkit toolkit and Python3 API chimeric genomic data analysis from proximity ligation methods.
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2024-08-07 |
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bcgtree
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public |
Automatized phylogenetic tree building from bacterial core genomes
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2024-08-07 |
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bamdash
|
public |
Aggregate pathogen NGS results into an interactive plot
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2024-08-07 |
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pybdei
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public |
Maximum likelihood estimation of Birth-Death Exposed-Infectious (BDEI) epidemiological model parameters from phylogenetic trees.
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2024-08-07 |
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snakemake-storage-plugin-azure
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public |
A Snakemake storage plugin to read and write from Azure Blob Storage
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2024-08-06 |
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phylodeep_data_bdss
|
public |
Package containing data for the phylodeep package.
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2024-08-06 |
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chewbbaca
|
public |
A complete suite for gene-by-gene schema creation and strain identification.
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2024-08-06 |
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tracegroomer
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public |
Format and normalise tracer metabolomics given file(s), to produce the .csv files which are ready for DIMet analysis.
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2024-08-06 |
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cospar
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public |
A toolkit for dynamic inference of cell fate by integrating state and lineage information.
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2024-08-06 |
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pytaxonkit
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public |
Python bindings for the TaxonKit library.
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2024-08-06 |
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kin
|
public |
A tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias.
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2024-08-06 |
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phylodeep_data_bdei
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public |
Package containing data for the phylodeep package.
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2024-08-06 |
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phylodeep_data_bd
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public |
Package containing data for the phylodeep package.
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2024-08-06 |
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pbptyper
|
public |
In silico Penicillin Binding Protein (PBP) typer for Streptococcus pneumoniae assemblies
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2024-08-06 |
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cite-seq-count
|
public |
A python package to map reads from CITE-seq or hashing data for single cell experiments.
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2024-08-05 |
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bam-readcount
|
public |
bam-readcount generates metrics at single nucleotide positions.
|
2024-08-05 |
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snapgene-reader
|
public |
Convert Snapgene *.dna files dict/json/biopython.
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2024-08-02 |
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pmultiqc
|
public |
Python package for quality control of proteomics datasets, based on multiqc package
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2024-08-02 |
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genewalk
|
public |
Determine gene function based on network embeddings.
|
2024-08-02 |
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carveme
|
public |
CarveMe: automated genome-scale metabolic model reconstruction
|
2024-08-02 |
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reframed
|
public |
Metabolic modeling package.
|
2024-08-02 |
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ncbi-fcs-gx
|
public |
The NCBI Foreign Contamination Screen. Genomic cross-species aligner, for contamination detection.
|
2024-08-01 |
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neofox
|
public |
Annotation of mutated peptide sequences (mps) with published or novel potential neo-epitope descriptors
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2024-08-01 |
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r-ichorcna
|
public |
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
|
2024-08-01 |
|
smof
|
public |
UNIX-style utilities for FASTA file exploration
|
2024-08-01 |
|
perl-json
|
public |
JSON (JavaScript Object Notation) encoder/decoder
|
2024-07-31 |
|
snakeatac_env
|
public |
snakemake based ATACseq pipeline
|
2024-07-31 |
|
espresso
|
public |
ESPRESSO (Error Statistics PRomoted Evaluator of Splice Site Options) processes long read RNA-seq data
|
2024-07-31 |
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bigslice
|
public |
A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data.
|
2024-07-31 |
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dbcan
|
public |
Standalone version of dbCAN annotation tool for automated CAZyme annotation
|
2024-07-31 |
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codoff
|
public |
codoff: program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the full genome.
|
2024-07-31 |
|
bio
|
public |
Command-line utilities to make bioinformatics explorations more enjoyable.
|
2024-07-30 |
|
subset-bam
|
public |
A tool to subset a 10x Genomics BAM file based on a tag, most commonly the cell barcode tag.
|
2024-07-30 |
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cstag
|
public |
Python module to manipulate the minimap2's CS tag
|
2024-07-29 |
|
neodisambiguate
|
public |
Disambiguate reads that were mapped to multiple references.
|
2024-07-28 |
|
nda-tools
|
public |
Python package for interacting with NDA web services.
|
2024-07-26 |
|
deepmei
|
public |
A tool to detect mobile elements insertion
|
2024-07-26 |
|
lusstr
|
public |
Tool for converting NGS sequence data of forensic STR loci to various annotation styles
|
2024-07-25 |
|
pychopper
|
public |
A tool to identify, orient and rescue full length cDNA reads from nanopore data.
|
2024-07-25 |
|
sincei
|
public |
A user-friendly toolkit for QC, counting, clustering and plotting of single-cell (epi)genomics data.
|
2024-07-25 |
|
morpheus
|
public |
mass spectrometry–based proteomics database search algorithm
|
2024-07-25 |
|
rcx-tk
|
public |
This package adjusts and cleans the metadata file provided by a user.
|
2024-07-25 |
|
eskrim
|
public |
ESKRIM: EStimate with K-mers the RIchness in a Microbiome
|
2024-07-24 |
|
elastic-blast
|
public |
ElasticBLAST is a cloud-based tool to perform your BLAST searches faster and make you more effective.
|
2024-07-24 |
|
arcas-hla
|
public |
high-resolution HLA typing from RNA seq
|
2024-07-24 |
|
ctxcore
|
public |
Core functions for pycisTarget and the SCENIC tool suite.
|
2024-07-24 |
|
seacells
|
public |
SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data.
|
2024-07-23 |
|
entrez-direct
|
public |
Entrez Direct (EDirect) is an advanced method for accessing the NCBI's set of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line arguments. Individual operations are combined to build multi-step queries. Record retrieval and formatting normally complete the process.
|
2024-07-23 |
