bioconda / packages / chewbbaca 2.1.0

A complete suite for gene-by-gene schema creation and strain identification

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v2.0.16
  • osx-64  v2.0.16
  • noarch  v2.1.0
To install this package with conda run one of the following:
conda install -c bioconda chewbbaca
conda install -c bioconda/label/cf201901 chewbbaca

Description

chewBBACA is a comprehensive pipeline including a set of functions for the creation and validation of whole genome and core genome MultiLocus Sequence Typing (wg/cgMLST) schemas, providing an allele calling algorithm based on Blast Score Ratio that can be run in multiprocessor settings and a set of functions to visualize and validate allele variation in the loci.

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