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obonet
|
public |
Parse OBO formatted ontologies into networkx
|
2024-07-22 |
|
chronumental
|
public |
Make time trees from large phylogenetic divergence trees
|
2024-07-22 |
|
r-epitrace
|
public |
Inference of cell age and phylogeny from single cell ATAC data.
|
2024-07-21 |
|
ymp
|
public |
Create entire NGS pipelines with one command
|
2024-07-19 |
|
pydna
|
public |
Representing double stranded DNA and functions for simulating cloning and homologous recombination between DNA molecules.
|
2024-07-19 |
|
gia
|
public |
Genomic Interval Arithmetic (gia)
|
2024-07-19 |
|
ggcaller
|
public |
A de Bruijn graph-based gene-caller and pangenome analysis tool
|
2024-07-19 |
|
scrubby
|
public |
Read depletion/extraction and database cleaning using k-mer and alignment methods
|
2024-07-19 |
|
tmhg
|
public |
tMHG-Finder is a tree-guided tool to partition whole genomes into maximal homologous groups.
|
2024-07-19 |
|
khipu-metabolomics
|
public |
Python library for generalized, low-level annotation of MS metabolomics
|
2024-07-19 |
|
r-ldweaver
|
public |
Perform genomewide epistasis analysis by evaluating the LD structure in bacteria.
|
2024-07-19 |
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paragone
|
public |
Identify ortholog groups from a set of paralog sequences from multiple taxa.
|
2024-07-19 |
|
clermontyping
|
public |
determine the Clermont E coli phylotype
|
2024-07-18 |
|
isa-rwval
|
public |
ISA metadata tracking tools
|
2024-07-18 |
|
jupiterplot
|
public |
Circos Assembly Consistency (Jupiter) plot
|
2024-07-18 |
|
cancerit-allelecount
|
public |
Support code for NGS copy number algorithms
|
2024-07-17 |
|
longphase
|
public |
LongPhase is an ultra-fast program for simultaneously co-phasing SNPs, small indels, large SVs, and (5mC) modifications for Nanopore and PacBio platforms.
|
2024-07-17 |
|
liftoff
|
public |
An accurate GFF3/GTF lift over pipeline
|
2024-07-16 |
|
graftm
|
public |
GraftM is a pipeline used for identifying and classifying marker gene reads from metagenomic datasets
|
2024-07-16 |
|
gtdb_to_taxdump
|
public |
GTDB database utility scripts
|
2024-07-15 |
|
bioconductor-maaslin2
|
public |
"Multivariable Association Discovery in Population-scale Meta-omics Studies"
|
2024-07-15 |
|
dropseq_tools
|
public |
Package for the analysis of Drop-seq data developed by Jim Nemesh in the McCarroll Lab
|
2024-07-15 |
|
influx-si-data-manager
|
public |
Data manager for handling influx_si inputs on Workflow4Metabolomics (usegalaxy.org)
|
2024-07-15 |
|
viguno
|
public |
Lookup OMIM genes and HPO terms and compute similarities
|
2024-07-15 |
|
hicap
|
public |
In silico typing of the H. influenzae capsule locus
|
2024-07-15 |
|
flumut
|
public |
A tool to search for molecular markers with potential impact on the biological characteristics of Influenza A viruses of the A(H5N1) subtype.
|
2024-07-15 |
|
jms-metabolite-services
|
public |
conversion, search of metabolic models and metabolomics data
|
2024-07-14 |
|
phold
|
public |
Phage annotation using protein structures
|
2024-07-13 |
|
aniclustermap
|
public |
A tool for drawing ANI clustermap between all-vs-all microbial genomes
|
2024-07-13 |
|
mmseqs2-server
|
public |
Server for MMseqs2, Foldseek and ColabFold
|
2024-07-11 |
|
nextalign
|
public |
Viral genome alignment
|
2024-07-11 |
|
nextclade2
|
public |
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
|
2024-07-10 |
|
physher
|
public |
A multi-algorithmic framework for phylogenetic inference
|
2024-07-10 |
|
phylornn
|
public |
PhyloRNN
|
2024-07-09 |
|
test
|
public |
Test recipe, copied from the seqtk recipe
|
2024-07-09 |
|
constava
|
public |
Calculate conformational states probability and variability from a protein structure ensemble
|
2024-07-09 |
|
ufcg
|
public |
UFCG pipeline provides methods for a genome-wide taxonomic profiling and annotation of your own biological sequences of Fungi.
|
2024-07-08 |
|
fq
|
public |
fq is a library to generate and validate FASTQ file pairs.
|
2024-07-08 |
|
crispector2
|
public |
Accurate estimation of off-target editing activity from comparative NGS data
|
2024-07-08 |
|
nextstrain
|
public |
Nextstrain toolchain (meta-package)
|
2024-07-07 |
|
b2btools
|
public |
The bio2Byte software suite to predict protein biophysical properties
|
2024-07-07 |
|
syny
|
public |
Genome collinearity inferences
|
2024-07-06 |
|
harmonypy
|
public |
A data integration algorithm.
|
2024-07-05 |
|
varcode
|
public |
Variant annotation in Python
|
2024-07-03 |
|
arriba
|
public |
Fast and accurate gene fusion detection from RNA-Seq data
|
2024-07-03 |
|
svist4get
|
public |
A simple visualization tool for genomic tracks from sequencing experiments
|
2024-07-03 |
|
vcf2circos
|
public |
A python package based on Plotly to help generate Circos plots from a VCF file or a JSON configuration file.
|
2024-07-03 |
|
pyclone-vi
|
public |
A fast method for inferring clonal population structure
|
2024-07-03 |
|
bwakit
|
public |
A self-consistent installation-free package of scripts and precompiled binaries, providing an end-to-end solution to read mapping
|
2024-07-02 |
|
mintie
|
public |
Method for Identifying Novel Transcripts and Isoforms
using Equivalence classes, in cancer and rare disease.
|
2024-07-02 |
