| Package Name | Access | Summary | Updated |
|---|---|---|---|
| rad_haplotyper | public | A program for building SNP haplotypes from RAD sequencing data | 2025-04-22 |
| commet | public | Comparing and combining multiple metagenomic datasets | 2025-04-22 |
| yanagiba | public | Filter short or low quality Oxford Nanopore reads which have been basecalled with Albacore. | 2025-04-22 |
| bioconductor-hicrep | public | Measuring the reproducibility of Hi-C data | 2025-04-22 |
| takeabreak | public | tool that can detect inversion breakpoints directly from raw NGS reads, without the need of any reference genome and without de novo assembling the genomes | 2025-04-22 |
| nanolyse | public | Removing lambda DNA control reads from fastq dataset | 2025-04-22 |
| tantan | public | tantan masks simple regions (low complexity & short-period tandem repeats) in biological sequences. | 2025-04-22 |
| graphprot | public | GraphProt is a tool for modelling binding preferences of RNA-binding proteins from high-throughput experiments such as CLIP-seq and RNAcompete. | 2025-04-22 |
| bioconductor-copynumber | public | Segmentation of single- and multi-track copy number data by penalized least squares regression. | 2025-04-22 |
| perl-io-gzip | public | Perl extension to provide a PerlIO layer to gzip/gunzip | 2025-04-22 |
| kissplice | public | A local transcriptome assembler for SNPs, indels and AS events | 2025-04-22 |
| mapsembler2 | public | Targeted assembly software | 2025-04-22 |
| mentalist | public | The MLST pipeline developed by the PathOGiST research group. | 2025-04-22 |
| sis | public | A tool that uses mummer to scaffold small genomes. | 2025-04-22 |
| bio_hansel | public | Subtype Salmonella enterica genomes using 33bp k-mer typing schemes. | 2025-04-22 |
| bioconductor-scran | public | Methods for Single-Cell RNA-Seq Data Analysis | 2025-04-22 |
| bioconductor-biseq | public | Processing and analyzing bisulfite sequencing data | 2025-04-22 |
| bioconductor-globaltest | public | Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing | 2025-04-22 |
| bioconductor-simpleaffy | public | Very simple high level analysis of Affymetrix data | 2025-04-22 |
| bioconductor-jaspar2014 | public | Data package for JASPAR | 2025-04-22 |
| perl-bio-cigar | public | Parse CIGAR strings and translate coordinates to/from reference/query | 2025-04-22 |
| perl-types-standard | public | bundled set of built-in types for Type::Tiny | 2025-04-22 |
| perl-pod-usage | public | Print a usage message from embedded pod documentation. | 2025-04-22 |
| xyalign | public | Command line tools and python library to infer ploidy, correct for sex chromosome complement, and work with NGS data | 2025-04-22 |
| perl-class-methodmaker | public | Create generic methods for OO Perl | 2025-04-22 |
