| Package Name | Access | Summary | Updated |
|---|---|---|---|
| shmlast | public | conditional reciprocal best hits with LAST | 2025-04-22 |
| rnachipintegrator | public | Analyse genes against peak data, and vice versa | 2025-04-22 |
| bxtools | public | Tools for analyzing 10X Genomics data | 2025-04-22 |
| trumicount | public | For NGS experiments using unique molecular identifiers (UMIs), molecules that are lost entirely during sequencing cause under- estimation of the molecule count, and amplification artifacts like PCR chimeras cause over-estimation. TRUmiCount corrects UMI data for both types of errors, thus improving the accuracy of measured molecule counts considerably. | 2025-04-22 |
| prophex | public | The ProPhex k-mer index. | 2025-04-22 |
| pal_finder | public | Find microsatellite repeat elements from sequencing reads and design PCR primers to amplify them | 2025-04-22 |
| avro-cwl | public | Avro is a serialization and RPC framework. This package is a fork of regular avro made by the CWL team in order to fix some issues (https://github.com/common-workflow-language/cwltool/issues/524) | 2025-04-22 |
| bioconductor-trigger | public | Transcriptional Regulatory Inference from Genetics of Gene ExpRession | 2025-04-22 |
| bioconductor-wavcluster | public | Sensitive and highly resolved identification of RNA-protein interaction sites in PAR-CLIP data | 2025-04-22 |
| bioconductor-yaqcaffy | public | Affymetrix expression data quality control and reproducibility analysis | 2025-04-22 |
| bioconductor-yarn | public | YARN: Robust Multi-Condition RNA-Seq Preprocessing and Normalization | 2025-04-22 |
| bioconductor-webbioc | public | Bioconductor Web Interface | 2025-04-22 |
| bioconductor-yamss | public | Tools for high-throughput metabolomics | 2025-04-22 |
| bioconductor-dmrcatedata | public | Data Package for DMRcate | 2025-04-22 |
| bioconductor-helloranges | public | Introduce *Ranges to bedtools users | 2025-04-22 |
| bioconductor-unifiedwmwqpcr | public | Unified Wilcoxon-Mann Whitney Test for testing differential expression in qPCR data | 2025-04-22 |
| bioconductor-mast | public | Model-based Analysis of Single Cell Transcriptomics | 2025-04-22 |
| bioconductor-splinetimer | public | Time-course differential gene expression data analysis using spline regression models followed by gene association network reconstruction | 2025-04-22 |
| bioconductor-abaenrichment | public | Gene expression enrichment in human brain regions | 2025-04-22 |
| bioconductor-fis | public | Human Functional Interactions (FIs) for splineTimeR package | 2025-04-22 |
| bioconductor-abadata | public | Averaged gene expression in human brain regions from Allen Brain Atlas | 2025-04-22 |
| bioconductor-arrmnormalization | public | Adaptive Robust Regression normalization for Illumina methylation data | 2025-04-22 |
| bioconductor-junctionseq | public | JunctionSeq: A Utility for Detection of Differential Exon and Splice-Junction Usage in RNA-Seq data | 2025-04-22 |
| bioconductor-lapmix | public | Laplace Mixture Model in Microarray Experiments | 2025-04-22 |
| bioconductor-arrmdata | public | Example dataset for normalization of Illumina 450k Methylation data | 2025-04-22 |
