bioconda / packages / pal_finder 0.02.04

Find microsatellite repeat elements from sequencing reads and design PCR primers to amplify them

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v0.02.04
  • osx-64  v0.02.04
To install this package with conda run one of the following:
conda install -c bioconda pal_finder
conda install -c bioconda/label/cf201901 pal_finder

Description

Finds microsatellite repeat elements directly from raw 454 or Illumina paired-end sequencing reads, and designs PCR primers to amplify these repeat loci in an automated fashion. Exact matches to repeats or 2-, 3-, 4-, 5-, and/or 6-mers are located and primer3 is then used to generate primer pairs to amplify regions containing microsatellite loci.

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