| Package Name | Access | Summary | Updated |
|---|---|---|---|
| adapterremovalfixprefix | public | Fixes adapter removal prefixes to make sure no clashing read names are in the output. | 2025-04-22 |
| r-perfmeas | public | Package that implements different performance measures for classification and ranking tasks. AUC, precision at a given recall, F-score for single and multiple classes are available. | 2025-04-22 |
| marge | public | Model-based Analysis of Regulation of Gene Expression | 2025-04-22 |
| cistrome_beta | public | Binding and Expression Target Analysis of ChIP-seq TF with differential gene expression | 2025-04-22 |
| vcf2genome | public | A tool to create a draft genome file out of a GATK VCF file and enabling users to filter the VCF in a single step. | 2025-04-22 |
| idr-py | public | Helper methods for accessing the Image Data Resource (IDR) | 2025-04-22 |
| bioconductor-arrayqualitymetrics | public | Quality metrics report for microarray data sets | 2025-04-22 |
| pispino | public | PISPINO (PIpits SPIN-Off tools): Bioinformatics toolkits for processing NGS data | 2025-04-22 |
| metagene_annotator | public | MetaGeneAnnotator is a gene-finding program for prokaryote and phage | 2025-04-22 |
| snakeparse | public | Making Snakemake workflows into full-fledged command line tools since 1999. | 2025-04-22 |
| bioconductor-rnbeads | public | RnBeads | 2025-04-22 |
| bioconductor-rnbeads.hg19 | public | RnBeads.hg19 | 2025-04-22 |
| bioconductor-rnbeads.mm10 | public | RnBeads.mm10 | 2025-04-22 |
| bioconductor-rnbeads.mm9 | public | RnBeads.mm9 | 2025-04-22 |
| bioconductor-rnbeads.rn5 | public | RnBeads.rn5 | 2025-04-22 |
| pydnase | public | DNase-seq analysis library | 2025-04-22 |
| dedup | public | DeDup is a tool for read deduplication in paired-end read merging (e.g. for ancient DNA experiments). | 2025-04-22 |
| clipandmerge | public | Clip&Merge is a tool to clip off adapters from sequencing reads and merge overlapping paired end reads together. | 2025-04-22 |
| metasnv | public | SNV calling software | 2025-04-22 |
| bioconductor-trackviewer | public | A R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data | 2025-04-22 |
| feelnc | public | FlExible Extraction of LncRNA | 2025-04-22 |
| quicksect | public | A cythonized, extended version of the interval search tree in bx | 2025-04-22 |
| smoove | public | structural variant calling and genotyping with existing tools, but, smoothly | 2025-04-22 |
| kmerinshort | public | KmerInShort counts kmers from a fasta/fastq file or list of files, and outputs results in a text file. It is limited to short kmers (k<15). It is a part of the FEELnc pipeline (V.Wucher et al.) | 2025-04-22 |
| catch | public | A package for designing compact and comprehensive capture probe sets. | 2025-04-22 |
