| Package Name | Access | Summary | Updated |
|---|---|---|---|
| scrappie | public | Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group | 2025-04-22 |
| bioconductor-zfpkm | public | A suite of functions to facilitate zFPKM transformations | 2025-04-22 |
| bioconductor-interminer | public | R Interface with InterMine-Powered Databases | 2025-04-22 |
| bioconductor-apeglm | public | Approximate posterior estimation for GLM coefficients | 2025-04-22 |
| microbecensus | public | A command-line tool for estimating average genome size from shotgun sequence data | 2025-04-22 |
| drax | public | A pipeline for Detecting Resistome Associated taXa. | 2025-04-22 |
| cannoli | public | Distributed execution of bioinformatics tools on Apache Spark | 2025-04-22 |
| fast5-research | public | ONT Research fast5 read/write package | 2025-04-22 |
| protk | public | protk (Proteomics toolkit) | 2025-04-22 |
| chromosomer | public | A reference-assisted assembly tool for producing draft chromosome sequences. | 2025-04-22 |
| bioformats | public | A collection of Python classes to handle bioinformatics data. | 2025-04-22 |
| telseq | public | A software for calculating telomere length | 2025-04-22 |
| skmer | public | Assembly-free and alignment-free tool for estimating genomic distances between genome-skims | 2025-04-22 |
| ctat-metagenomics | public | ctat-metagenomics uses centrifuge | 2025-04-22 |
| bioconductor-nadfinder | public | Call wide peaks for sequencing data | 2025-04-22 |
| bioconductor-maftools | public | Summarize, Analyze and Visualize MAF Files | 2025-04-22 |
| suppa | public | A tool to study splicing across multiple conditions at high speed and accuracy. | 2025-04-22 |
| tpp | public | The Trans-Proteomic Pipeline (TPP) is a collection of integrated tools for MS/MS proteomics developed at the Seattle Proteome Center. The Bioconda package includes the command-line versions of the TPP toolset. These programs include tools for validation (PeptideProphet, iProphet, ProteinProphet, Mayu) and quantification (XPRESS, ASAPRatio, Libra) as well as a number of parsers and converters (Out2XML, Mascot2XML, Tandem2XML, etc). | 2025-04-22 |
| perl-findbin-libs | public | locate and a 'use lib' or export directories based on $FindBin::Bin. | 2025-04-22 |
| perl-module-fromperlver | public | install modules compatible with the running perl. | 2025-04-22 |
| k-slam | public | k-SLAM is a program for alignment based metagenomic analysis of large sets of high-throughput sequence data. | 2025-04-22 |
| straitrazor | public | The STR Allele Identification Tool | 2025-04-22 |
| circularmapper | public | A method to improve mappings on circular genomes, using the BWA mapper. | 2025-04-22 |
| damageprofiler | public | A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage | 2025-04-22 |
| r-hemdag | public | a collection of Hierarchical Ensemble Methods (HEMs) for Directed Acyclic Graphs (DAGs). | 2025-04-22 |
