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bioconductor-zfpkm

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A suite of functions to facilitate zFPKM transformations

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-zfpkm

Usage Tracking

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Description

Perform the zFPKM transform on RNA-seq FPKM data. This algorithm is based on the publication by Hart et al., 2013 (Pubmed ID 24215113). Reference recommends using zFPKM > -3 to select expressed genes. Validated with encode open/closed chromosome data. Works well for gene level data using FPKM or TPM. Does not appear to calibrate well for transcript level data.

About

Summary

A suite of functions to facilitate zFPKM transformations

Last Updated

Dec 22, 2024 at 11:04

License

GPL-3 | file LICENSE

Total Downloads

34.7K

Supported Platforms

noarch

Unsupported Platforms

linux-64 Last supported version: 1.2.0
macOS-64 Last supported version: 1.2.0