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bioconda / packages / bioconductor-zfpkm 1.24.0

A suite of functions to facilitate zFPKM transformations

Installers

Info: This package contains files in non-standard labels.
  • osx-64 v1.2.0
  • linux-64 v1.2.0
  • noarch v1.24.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-zfpkm
conda install bioconda/label/cf201901::bioconductor-zfpkm
conda install bioconda/label/gcc7::bioconductor-zfpkm

Description

Perform the zFPKM transform on RNA-seq FPKM data. This algorithm is based on the publication by Hart et al., 2013 (Pubmed ID 24215113). Reference recommends using zFPKM > -3 to select expressed genes. Validated with encode open/closed chromosome data. Works well for gene level data using FPKM or TPM. Does not appear to calibrate well for transcript level data.


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