bioconductor-zfpkm
A suite of functions to facilitate zFPKM transformations
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Description
Perform the zFPKM transform on RNA-seq FPKM data. This algorithm is based on the publication by Hart et al., 2013 (Pubmed ID 24215113). Reference recommends using zFPKM > -3 to select expressed genes. Validated with encode open/closed chromosome data. Works well for gene level data using FPKM or TPM. Does not appear to calibrate well for transcript level data.
About
Summary
A suite of functions to facilitate zFPKM transformations
Last Updated
Dec 22, 2024 at 11:04
License
GPL-3 | file LICENSE
Total Downloads
34.7K
Supported Platforms
noarch
Unsupported Platforms
linux-64 Last supported version: 1.2.0
macOS-64 Last supported version: 1.2.0