| Package Name | Access | Summary | Updated |
|---|---|---|---|
| bioconductor-rnbeads.hg19 | public | RnBeads.hg19 | 2025-04-22 |
| bioconductor-rnbeads.mm10 | public | RnBeads.mm10 | 2025-04-22 |
| bioconductor-rnbeads.mm9 | public | RnBeads.mm9 | 2025-04-22 |
| bioconductor-rnbeads.rn5 | public | RnBeads.rn5 | 2025-04-22 |
| pydnase | public | DNase-seq analysis library | 2025-04-22 |
| dedup | public | DeDup is a tool for read deduplication in paired-end read merging (e.g. for ancient DNA experiments). | 2025-04-22 |
| clipandmerge | public | Clip&Merge is a tool to clip off adapters from sequencing reads and merge overlapping paired end reads together. | 2025-04-22 |
| metasnv | public | SNV calling software | 2025-04-22 |
| bioconductor-trackviewer | public | A R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data | 2025-04-22 |
| feelnc | public | FlExible Extraction of LncRNA | 2025-04-22 |
| quicksect | public | A cythonized, extended version of the interval search tree in bx | 2025-04-22 |
| smoove | public | structural variant calling and genotyping with existing tools, but, smoothly | 2025-04-22 |
| kmerinshort | public | KmerInShort counts kmers from a fasta/fastq file or list of files, and outputs results in a text file. It is limited to short kmers (k<15). It is a part of the FEELnc pipeline (V.Wucher et al.) | 2025-04-22 |
| catch | public | A package for designing compact and comprehensive capture probe sets. | 2025-04-22 |
| perl-sys-sigaction | public | Perl extension for Consistent Signal Handling | 2025-04-22 |
| rnasketch | public | RNAsketch Library for designing RNA molecules. Glue between RNAblueprint/RNARedPrint and ViennaRNA, Nupack, Hotknots, pKiss. | 2025-04-22 |
| rnablueprint | public | The RNAblueprint library solves the problem of uniformly sampling RNA/DNA sequences compatible to multiple structural constraints and sequence constraints. | 2025-04-22 |
| shmlast | public | conditional reciprocal best hits with LAST | 2025-04-22 |
| rnachipintegrator | public | Analyse genes against peak data, and vice versa | 2025-04-22 |
| bxtools | public | Tools for analyzing 10X Genomics data | 2025-04-22 |
| trumicount | public | For NGS experiments using unique molecular identifiers (UMIs), molecules that are lost entirely during sequencing cause under- estimation of the molecule count, and amplification artifacts like PCR chimeras cause over-estimation. TRUmiCount corrects UMI data for both types of errors, thus improving the accuracy of measured molecule counts considerably. | 2025-04-22 |
| prophex | public | The ProPhex k-mer index. | 2025-04-22 |
| pal_finder | public | Find microsatellite repeat elements from sequencing reads and design PCR primers to amplify them | 2025-04-22 |
| avro-cwl | public | Avro is a serialization and RPC framework. This package is a fork of regular avro made by the CWL team in order to fix some issues (https://github.com/common-workflow-language/cwltool/issues/524) | 2025-04-22 |
| bioconductor-trigger | public | Transcriptional Regulatory Inference from Genetics of Gene ExpRession | 2025-04-22 |
