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pkiss
|
public |
RNA secondary structure prediction including K-type and kissing hairpin- pseudoknots.
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2025-04-22 |
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ctat-metagenomics
|
public |
ctat-metagenomics uses centrifuge
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2025-04-22 |
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bioconductor-nadfinder
|
public |
Call wide peaks for sequencing data
|
2025-04-22 |
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bioconductor-maftools
|
public |
Summarize, Analyze and Visualize MAF Files
|
2025-04-22 |
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mikado
|
public |
A Python3 annotation program to select the best gene model in each locus
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2025-04-22 |
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suppa
|
public |
A tool to study splicing across multiple conditions at high speed and accuracy.
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2025-04-22 |
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tpp
|
public |
The Trans-Proteomic Pipeline (TPP) is a collection of integrated tools for MS/MS proteomics developed at the Seattle Proteome Center. The Bioconda package includes the command-line versions of the TPP toolset. These programs include tools for validation (PeptideProphet, iProphet, ProteinProphet, Mayu) and quantification (XPRESS, ASAPRatio, Libra) as well as a number of parsers and converters (Out2XML, Mascot2XML, Tandem2XML, etc).
|
2025-04-22 |
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perl-findbin-libs
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public |
locate and a 'use lib' or export directories based on $FindBin::Bin.
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2025-04-22 |
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perl-module-fromperlver
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public |
install modules compatible with the running perl.
|
2025-04-22 |
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k-slam
|
public |
k-SLAM is a program for alignment based metagenomic analysis of large sets of high-throughput sequence data.
|
2025-04-22 |
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straitrazor
|
public |
The STR Allele Identification Tool
|
2025-04-22 |
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circularmapper
|
public |
A method to improve mappings on circular genomes, using the BWA mapper.
|
2025-04-22 |
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damageprofiler
|
public |
A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage
|
2025-04-22 |
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r-hemdag
|
public |
a collection of Hierarchical Ensemble Methods (HEMs) for Directed Acyclic Graphs (DAGs).
|
2025-04-22 |
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adapterremovalfixprefix
|
public |
Fixes adapter removal prefixes to make sure no clashing read names are in the output.
|
2025-04-22 |
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r-perfmeas
|
public |
Package that implements different performance measures for classification and ranking tasks. AUC, precision at a given recall, F-score for single and multiple classes are available.
|
2025-04-22 |
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marge
|
public |
Model-based Analysis of Regulation of Gene Expression
|
2025-04-22 |
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cistrome_beta
|
public |
Binding and Expression Target Analysis of ChIP-seq TF with differential gene expression
|
2025-04-22 |
|
vcf2genome
|
public |
A tool to create a draft genome file out of a GATK VCF file and enabling users to filter the VCF in a single step.
|
2025-04-22 |
|
idr-py
|
public |
Helper methods for accessing the Image Data Resource (IDR)
|
2025-04-22 |
|
bioconductor-arrayqualitymetrics
|
public |
Quality metrics report for microarray data sets
|
2025-04-22 |
|
pispino
|
public |
PISPINO (PIpits SPIN-Off tools): Bioinformatics toolkits for processing NGS data
|
2025-04-22 |
|
metagene_annotator
|
public |
MetaGeneAnnotator is a gene-finding program for prokaryote and phage
|
2025-04-22 |
|
snakeparse
|
public |
Making Snakemake workflows into full-fledged command line tools since 1999.
|
2025-04-22 |
|
bioconductor-rnbeads
|
public |
RnBeads
|
2025-04-22 |
