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fseq
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public |
F-Seq: A feature density estimator for high-throughput sequence tags
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2025-04-22 |
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fusion-filter
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public |
FusionFilter provides a common fusion-finding, filtering, and annotation framework for the Trinity Cancer Transcriptome Analysis Toolkit (CTAT).
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2025-04-22 |
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libdeflate
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public |
libdeflate is a library for fast, whole-buffer DEFLATE-based compression and decompression.
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2025-04-22 |
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ncbi-ngs-sdk
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public |
NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing.
|
2025-04-22 |
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bloocoo
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public |
Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint. As an example, it can correct whole human genome re-sequencing reads at 70 x coverage with less than 4GB of memory.
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2025-04-22 |
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pyvolve
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public |
Pyvolve is an open-source Python module for simulating sequences along a phylogenetic tree according to continuous-time Markov models of sequence evolution. Please cite: Spielman, S.J., and Wilke, C.O. (2015). Pyvolve: A Flexible Python Module for Simulating Sequences along Phylogenies. PLOS ONE 10, e0139047.
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2025-04-22 |
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perl-bio-mlst-check
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public |
Multilocus sequence type checking using blast
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2025-04-22 |
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bioconductor-biocfilecache
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public |
Manage Files Across Sessions
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2025-04-22 |
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libssw
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public |
An SIMD Smith-Waterman C/C++/Python/Java Library for Use in Genomic Applications.
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2025-04-22 |
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perl-file-touch
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public |
update file access and modification times, optionally creating files if needed
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2025-04-22 |
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perl-test-mockmodule
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public |
Override subroutines in a module for unit testing
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2025-04-22 |
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perl-super
|
public |
control superclass method dispatch
|
2025-04-22 |
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sloika
|
public |
Sloika is Oxford Nanopore Technologies' software for training neural network models for base calling
|
2025-04-22 |
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bioconductor-consensusov
|
public |
Gene expression-based subtype classification for high-grade serous ovarian cancer
|
2025-04-22 |
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mamotif
|
public |
An integrative toolkit for detecting cell type-specific regulators
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2025-04-22 |
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motifscan
|
public |
A package for motif discovery and motif enrichment analysis
|
2025-04-22 |
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scrappie
|
public |
Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group
|
2025-04-22 |
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bioconductor-zfpkm
|
public |
A suite of functions to facilitate zFPKM transformations
|
2025-04-22 |
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bioconductor-interminer
|
public |
R Interface with InterMine-Powered Databases
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2025-04-22 |
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bioconductor-apeglm
|
public |
Approximate posterior estimation for GLM coefficients
|
2025-04-22 |
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microbecensus
|
public |
A command-line tool for estimating average genome size from shotgun sequence data
|
2025-04-22 |
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drax
|
public |
A pipeline for Detecting Resistome Associated taXa.
|
2025-04-22 |
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cannoli
|
public |
Distributed execution of bioinformatics tools on Apache Spark
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2025-04-22 |
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fast5-research
|
public |
ONT Research fast5 read/write package
|
2025-04-22 |
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protk
|
public |
protk (Proteomics toolkit)
|
2025-04-22 |
