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bioconductor-snprelate
|
public |
Parallel Computing Toolset for Relatedness and Principal Component Analysis of SNP Data
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2025-04-22 |
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bioconductor-gdsfmt
|
public |
R Interface to CoreArray Genomic Data Structure (GDS) Files
|
2025-04-22 |
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r-quorts
|
public |
The QoRTs software package is a fast, efficient, and portable multifunction toolkit designed to assist in the analysis, quality control, and data management of RNA-Seq datasets.
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2025-04-22 |
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perl-extutils-constant
|
public |
generate XS code to import C header constants
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2025-04-22 |
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fqtrim
|
public |
fqtrim is a versatile stand-alone utility that can be used to trim adapters, poly-A tails, terminal unknown bases (Ns) and low quality 3' regions in reads from high-throughput next-generation sequencing machines.
|
2025-04-22 |
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assemblerflow
|
public |
A Nextflow pipeline assembler for genomics. Pick your modules. Assemble them. Run the pipeline.
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2025-04-22 |
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perl-extutils-cbuilder
|
public |
Compile and link C code for Perl modules
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2025-04-22 |
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vqsr_cnn
|
public |
Variant quality score recalibration with Convolutional Neural Networks
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2025-04-22 |
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mmvc
|
public |
Call variants based on a Bayesian multinomial mixture model.
|
2025-04-22 |
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pbhoover
|
public |
Variant caller for legacy and low coverage Pacific Biosciences' long-read sequencing data
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2025-04-22 |
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brockman-pipeline
|
public |
Brockman Representation Of Chromatin by K-mers in Mark-Associated Nucleotides
|
2025-04-22 |
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amused
|
public |
Auditing Motifs Using Statistical Enrichment & Depletion
|
2025-04-22 |
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ruby-dna-tools
|
public |
Various libraries containing useful functions for working with DNA sequences, written in ruby. Some tools are not specific to DNA.
|
2025-04-22 |
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genometester4
|
public |
A toolkit for performing set operations - union, intersection and complement - on k-mer lists.
|
2025-04-22 |
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segtools
|
public |
a python package for analyzing genomic segmentations
|
2025-04-22 |
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comparative-annotation-toolkit
|
public |
A straightforward end-to-end pipeline that takes as input a HAL-format multiple whole genome alignment as well as a GFF3 file representing annotations on one high quality assembly in the HAL alignment, and produces a output GFF3 annotation on all target genomes chosen
|
2025-04-22 |
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ucsc-clustergenes
|
public |
Cluster genes from genePred tracks
|
2025-04-22 |
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amptk
|
public |
AMPtk: Amplicon tool kit for processing high throughput amplicon sequencing data.
|
2025-04-22 |
|
gblocks
|
public |
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.
|
2025-04-22 |
|
tardis
|
public |
Pre-processor for bioinformatics cluster job submission
|
2025-04-22 |
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satsuma2
|
public |
FFT cross-correlation based synteny aligner, (re)designed to make full use of parallel computing
|
2025-04-22 |
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samclip
|
public |
Filter SAM file for soft and hard clipped alignments
|
2025-04-22 |
|
taeper
|
public |
Simulate repeating a nanopore experiment.
|
2025-04-22 |
|
deblur
|
public |
Deblur is a greedy deconvolution algorithm based on known read error profiles.
|
2025-04-22 |
|
xatlas
|
public |
xAtlas is a fast and retrainable small variant caller that has been developed at the Baylor College of Medicine Human Genome Sequencing Center.
|
2025-04-22 |
