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feelnc
|
public |
FlExible Extraction of LncRNA
|
2023-06-16 |
|
fast5seek
|
public |
Get paths for fast5 files contained in BAM, SAM, or fastq.
|
2023-06-16 |
|
samclip
|
public |
Filter SAM file for soft and hard clipped alignments
|
2023-06-16 |
|
ctat-metagenomics
|
public |
ctat-metagenomics uses centrifuge
|
2023-06-16 |
|
bioconductor-flowq
|
public |
Provides quality control and quality assessment tools for flow cytometry data.
|
2023-06-16 |
|
ucsc-hgtrackdb
|
public |
Create trackDb table from text files.
|
2023-06-16 |
|
maaslin
|
public |
MaAsLin is a multivariate statistical framework that finds associations between clinical metadata and microbial community abundance or function.
|
2023-06-16 |
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ucsc-hubcheck
|
public |
Check a track data hub for integrity.
|
2023-06-16 |
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sina
|
public |
Reference based multiple sequence alignment
|
2023-06-16 |
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visceral-evaluatesegmentation
|
public |
EvaluateSegmentation is a tool that compares two volumes (a test segmentation and a ground truth segmentation) using 22 different metrics that were selected as a result of a comprehensive research into the metrics used in the medical volume segmentations.
|
2023-06-16 |
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perl-sereal
|
public |
Fast, compact, powerful binary (de-)serialization
|
2023-06-16 |
|
perl-importer
|
public |
Alternative but compatible interface to modules that export symbols.
|
2023-06-16 |
|
perl-sereal-encoder
|
public |
Fast, compact, powerful binary serialization
|
2023-06-16 |
|
perl-class-accessor
|
public |
Automated accessor generation
|
2023-06-16 |
|
perl-clone-pp
|
public |
Recursively copy Perl datatypes
|
2023-06-16 |
|
perl-sereal-decoder
|
public |
Fast, compact, powerful binary deserialization
|
2023-06-16 |
|
perl-type-tiny
|
public |
tiny, yet Moo(se)-compatible type constraint
|
2023-06-16 |
|
galaxy-lib
|
public |
Subset of Galaxy (http://galaxyproject.org/) core code base designed to be used a library.
|
2023-06-16 |
|
validators
|
public |
Python Data Validation for Humans.
|
2023-06-16 |
|
bioconductor-cand
|
public |
Perform Chromosomal Ancestry Differences (CAnD) Analyses
|
2023-06-16 |
|
xopen
|
public |
Open compressed files transparently in Python
|
2023-06-16 |
|
perl-test-simple
|
public |
Basic utilities for writing tests.
|
2023-06-16 |
|
bioconductor-snpchip
|
public |
Visualizations for copy number alterations
|
2023-06-16 |
|
bioconductor-affycompatible
|
public |
Affymetrix GeneChip software compatibility
|
2023-06-16 |
|
bioconductor-lmgene
|
public |
LMGene Software for Data Transformation and Identification of Differentially Expressed Genes in Gene Expression Arrays
|
2023-06-16 |
|
perl-compress-raw-bzip2
|
public |
Low-Level Interface to bzip2 compression library
|
2023-06-16 |
|
perl-package-stash
|
public |
routines for manipulating stashes
|
2023-06-16 |
|
bioconductor-sepa
|
public |
Given single-cell RNA-seq data and true experiment time of cells or pseudo-time cell ordering, SEPA provides convenient functions for users to assign genes into different gene expression patterns such as constant, monotone increasing and increasing then decreasing. SEPA then performs GO enrichment analysis to analysis the functional roles of genes with same or similar patterns.
|
2023-06-16 |
|
perl-test-class-moose
|
public |
Serious testing for serious Perl
|
2023-06-16 |
|
perl-algorithm-dependency
|
public |
Base class for implementing various dependency trees
|
2023-06-16 |
|
phyloflash
|
public |
phyloFlash is a pipeline to rapidly reconstruct the SSU rRNAs and explore
phylogenetic composition of an illumina (meta)genomic dataset.
|
2023-06-16 |
|
bioconductor-tarseqqc
|
public |
TARgeted SEQuencing Experiment Quality Control
|
2023-06-16 |
|
bioconductor-ripseeker
|
public |
RIPSeeker: a statistical package for identifying protein-associated transcripts from RIP-seq experiments
|
2023-06-16 |
|
bioconductor-profia
|
public |
Preprocessing of FIA-HRMS data
|
2023-06-16 |
|
perl-bio-viennangs
|
public |
A Perl distribution for Next-Generation Sequencing (NGS) data analysis
|
2023-06-16 |
|
perl-text-parsewords
|
public |
parse text into an array of tokens or array of arrays
|
2023-06-16 |
|
bioconductor-nem
|
public |
(Dynamic) Nested Effects Models and Deterministic Effects Propagation Networks to reconstruct phenotypic hierarchies
|
2023-06-16 |
|
perl-data-dumper
|
public |
seeds germane, yet not germinated
|
2023-06-16 |
|
spectra-cluster-cli
|
public |
This is a stand-alone implementation of the new updated PRIDE Cluster algorithm. It is based on the spectra-cluster API and uses a highly similar logic as the Hadoop implementation spectra-cluster-hadoop used to build the PRIDE Cluster resource.
|
2023-06-16 |
|
galaxy-parsec
|
public |
Command-line utilities to assist in interacting with Galaxy servers (http://galaxyproject.org/).
|
2023-06-16 |
|
bioconductor-pkgdeptools
|
public |
Package Dependency Tools
|
2023-06-16 |
|
bioconductor-papi
|
public |
Predict metabolic pathway activity based on metabolomics data
|
2023-06-16 |
|
bioconductor-qrqc
|
public |
Quick Read Quality Control
|
2023-06-16 |
|
perl-term-app-roles
|
public |
Collection of roles for terminal-based application
|
2023-06-16 |
|
gromacs
|
public |
GROMACS is a versatile package to perform molecular dynamics.
|
2023-06-16 |
|
corset
|
public |
Software for clustering de novo assembled transcripts and counting overlapping reads.
|
2023-06-16 |
|
scikits-datasmooth
|
public |
Scikits data smoothing package
|
2023-06-16 |
|
swalign
|
public |
Smith-Waterman local aligner
|
2023-06-16 |
|
humann2
|
public |
HUMAnN2: The HMP Unified Metabolic Analysis Network 2
|
2023-06-16 |
|
python-tripal
|
public |
Tripal API library
|
2023-06-16 |
