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bioconductor-mergemaid
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public |
Merge Maid
|
2023-06-16 |
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bioconductor-birta
|
public |
Bayesian Inference of Regulation of Transcriptional Activity
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2023-06-16 |
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bioconductor-maanova
|
public |
Tools for analyzing Micro Array experiments
|
2023-06-16 |
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bioconductor-birte
|
public |
Expression levels of mRNA molecules are regulated by different processes, comprising inhibition or activation by transcription factors and post-transcriptional degradation by microRNAs. biRte uses regulatory networks of TFs, miRNAs and possibly other factors, together with mRNA, miRNA and other available expression data to predict the relative influence of a regulator on the expression of its target genes. Inference is done in a Bayesian modeling framework using Markov-Chain-Monte-Carlo. A special feature is the possibility for follow-up network reverse engineering between active regulators.
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2023-06-16 |
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bioconductor-manta
|
public |
Microbial Assemblage Normalized Transcript Analysis
|
2023-06-16 |
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bioconductor-srap
|
public |
Simplified RNA-Seq Analysis Pipeline
|
2023-06-16 |
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bioconductor-bitseq
|
public |
Transcript expression inference and differential expression analysis for RNA-seq data
|
2023-06-16 |
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bioconductor-sspa
|
public |
General Sample Size and Power Analysis for Microarray and Next-Generation Sequencing Data
|
2023-06-16 |
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bioconductor-sigpathway
|
public |
Pathway Analysis
|
2023-06-16 |
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r-phangorn
|
public |
Package contains methods for estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, distance methods and Hadamard conjugation. Allows to compare trees, models selection and offers visualizations for trees and split networks.
|
2023-06-16 |
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r-data.table
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public |
Fast aggregation of large data (e.g. 100GB in RAM), fast ordered joins, fast add/modify/delete of columns by group using no copies at all, list columns, friendly and fast character-separated-value read/write. Offers a natural and flexible syntax, for faster development.
|
2023-06-16 |
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anvio
|
public |
A platform for integrated multi-omics
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2023-06-16 |
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beast2
|
public |
BEAST 2 is a cross-platform program for Bayesian phylogenetic analysis of molecular sequences.
|
2023-06-16 |
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nanostat
|
public |
Calculate statistics for Oxford Nanopore sequencing data and alignments
|
2023-06-16 |
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yara
|
public |
Yara is an exact tool for aligning DNA sequencing reads to reference genomes.
|
2023-06-16 |
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eoulsan
|
public |
A pipeline and a framework for NGS analysis (RNA-Seq and Chip-Seq)
|
2023-06-16 |
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perl-datetime-format-strptime
|
public |
Parse and format strp and strf time patterns
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2023-06-16 |
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perl-git-wrapper
|
public |
Wrap git(7) command-line interface
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2023-06-16 |
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perl-json-maybexs
|
public |
Use Cpanel::JSON::XS with a fallback to JSON::XS and JSON::PP
|
2023-06-16 |
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textinput
|
public |
streamlined version of stdlib fileinput
|
2023-06-16 |
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perl-moosex-types
|
public |
Organise your Moose types in libraries
|
2023-06-16 |
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perl-moosex-fileattribute
|
public |
Sugar for classes that have file or directory attributes
|
2023-06-16 |
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perl-git-wrapper-plus
|
public |
A Toolkit for working with Git::Wrapper in an Object Oriented Way.
|
2023-06-16 |
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perl-color-theme
|
public |
Color theme structure
|
2023-06-16 |
|
perl-test-classapi
|
public |
Provides basic first-pass API testing for large class trees
|
2023-06-16 |
|
autolog
|
public |
quick and easy logging setup
|
2023-06-16 |
|
perl-moosex-getopt
|
public |
A Moose role for processing command line options
|
2023-06-16 |
|
perl-extutils-helpers
|
public |
Various portability utilities for module builders
|
2023-06-16 |
|
cwltest
|
public |
Common workflow language testing framework
|
2023-06-16 |
|
perl-test-harness
|
public |
contributing to TAP::Harness
|
2023-06-16 |
|
perl-text-csv
|
public |
comma-separated values manipulator (using XS or PurePerl)
|
2023-06-16 |
|
genomicconsensus
|
public |
No Summary
|
2023-06-16 |
|
optbuild
|
public |
build command lines for external programs
|
2023-06-16 |
|
perl-class-load-xs
|
public |
XS implementation of parts of Class::Load
|
2023-06-16 |
|
connor
|
public |
A command-line tool to deduplicate bam files based on custom, inline barcoding.
|
2023-06-16 |
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perl-extutils-installpaths
|
public |
Build.PL install path logic made easy
|
2023-06-16 |
|
junit-xml
|
public |
Creates JUnit XML test result documents that can be read by tools such as Jenkins
|
2023-06-16 |
|
optplus
|
public |
additional options for optparse
|
2023-06-16 |
|
perl-perlio-utf8_strict
|
public |
Fast and correct UTF-8 IO
|
2023-06-16 |
|
pypeflow
|
public |
Light weight and reusable make / flow data process library written in Python
|
2023-06-16 |
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perl-log-log4perl
|
public |
Log4j implementation for Perl
|
2023-06-16 |
|
perl-module-metadata
|
public |
Gather package and POD information from perl module files
|
2023-06-16 |
|
python-consensuscore
|
public |
PacBio Quiver Consensus library for RSII data
|
2023-06-16 |
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perl-image-exiftool
|
public |
ExifTool is a platform-independent Perl library plus a command-line application for reading, writing and editing meta information in a wide variety of files.
|
2023-06-16 |
|
agg
|
public |
gvcf aggregation tool
|
2023-06-16 |
|
jbrowse
|
public |
The JBrowse Genome Browser
|
2023-06-16 |
|
perl-parse-yapp
|
public |
A perl frontend to the Parse::Yapp module
|
2023-06-16 |
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perl-date-manip
|
public |
Date manipulation routines
|
2023-06-16 |
|
perl-test-output
|
public |
Utilities to test STDOUT and STDERR messages.
|
2023-06-16 |
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nanosim-h
|
public |
NanoSim-H is a simulator of Oxford Nanopore reads that captures the technology-specific features of ONT data, and allows for adjustments upon improvement of Nanopore sequencing technology.
|
2023-06-16 |
