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funnel
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public |
Funnel is a toolkit for distributed task execution via a simple, standard API
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2025-04-22 |
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bioconductor-pmm
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public |
Parallel Mixed Model
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2025-04-22 |
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bioconductor-genoset
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public |
A RangedSummarizedExperiment with methods for copy number analysis
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2025-04-22 |
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bioconductor-prebs
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public |
Probe region expression estimation for RNA-seq data for improved microarray comparability
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2025-04-22 |
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bioconductor-geneoverlap
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public |
Test and visualize gene overlaps
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2025-04-22 |
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bioconductor-geneattribution
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public |
Identification of candidate genes associated with genetic variation
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2025-04-22 |
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bioconductor-generecommender
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public |
A gene recommender algorithm to identify genes coexpressed with a query set of genes
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2025-04-22 |
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bioconductor-shinymethyl
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public |
Interactive visualization for Illumina methylation arrays
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2025-04-22 |
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bioconductor-affycoretools
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public |
Functions useful for those doing repetitive analyses with Affymetrix GeneChips
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2025-04-22 |
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bioconductor-ruvnormalize
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public |
RUV for normalization of expression array data
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2025-04-22 |
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bioconductor-reportingtools
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public |
Tools for making reports in various formats
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2025-04-22 |
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bioconductor-ruvnormalizedata
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public |
Gender data for the RUVnormalize package
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2025-04-22 |
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bioconductor-pfam.db
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public |
A set of protein ID mappings for PFAM
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2025-04-22 |
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elprep
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public |
elPrep is a high-performance tool for preparing .sam/.bam files for variant calling in sequencing pipelines. It can be used as a drop-in replacement for SAMtools/Picard/GATK4.
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2025-04-22 |
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bioconductor-dsimer
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public |
dSimer is an R package which provides computation of nine methods for measuring disease-disease similarity, including a standard cosine similarity measure and eight function-based methods. The disease similarity matrix obtained from these nine methods can be visualized through heatmap and network. Biological data widely used in disease-disease associations study are also provided by dSimer.
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2025-04-22 |
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bioconductor-girafe
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public |
Genome Intervals and Read Alignments for Functional Exploration
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2025-04-22 |
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bioconductor-illuminahumanmethylation450kmanifest
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public |
Manifest for Illumina's 450k array data
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2025-04-22 |
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bioconductor-sincell
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public |
R package for the statistical assessment of cell state hierarchies from single-cell RNA-seq data
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2025-04-22 |
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bioconductor-simlr
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public |
Single-cell Interpretation via Multi-kernel LeaRning (SIMLR)
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2025-04-22 |
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bioconductor-snagee
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public |
Signal-to-Noise applied to Gene Expression Experiments
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2025-04-22 |
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bioconductor-snageedata
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public |
SNAGEE data
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2025-04-22 |
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r-traminer
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public |
Toolbox for the manipulation, description and rendering of sequences, and more generally the mining of sequence data in the field of social sciences. Although the toolbox is primarily intended for analyzing state or event sequences that describe life courses such as family formation histories or professional careers, its features also apply to many other kinds of categorical sequence data. It accepts many different sequence representations as input and provides tools for converting sequences from one format to another. It offers several functions for describing and rendering sequences, for computing distances between sequences with different metrics (among which optimal matching), original dissimilarity-based analysis tools, and simple functions for extracting the most frequent subsequences and identifying the most discriminating ones among them. A user's guide can be found on the TraMineR web page.
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2025-04-22 |
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biodiff
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public |
exact comparison of biological sequences
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2025-04-22 |
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ghostz
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public |
GHOSTZ is a highly efficient remote homologue detection tool
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2025-04-22 |
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svdb
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public |
structural variant database software
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2025-04-22 |
