exact comparison of biological sequences


Info: This package contains files in non-standard labels.

conda install

  • linux-64  v0.2.2
  • osx-64  v0.2.2
To install this package with conda run one of the following:
conda install -c bioconda biodiff
conda install -c bioconda/label/cf201901 biodiff


biodiff is a variant caller that determines the exact differences between two biological sequences. It can operate on DNA and protein sequences, as long as they are in fasta format. The sequences to be compared must have the same fasta header (up to the first whitespace). If the reference and query each have only one sequence, however, the header need not match and the comparison will be done, but a warning will be emitted. Output is in the Variant Call Format.

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